Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   EL216_RS09115 Genome accession   NZ_LR134440
Coordinates   1942882..1943745 (+) Length   287 a.a.
NCBI ID   WP_085391166.1    Uniprot ID   -
Organism   Neisseria animaloris strain NCTC12228     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1937882..1948745
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL216_RS09095 (NCTC12228_01835) - 1938600..1939220 (-) 621 WP_085391169.1 isochorismatase family protein -
  EL216_RS09105 (NCTC12228_01837) pilF 1939921..1941600 (+) 1680 WP_085391168.1 type IV-A pilus assembly ATPase PilB Machinery gene
  EL216_RS09110 (NCTC12228_01838) pilG 1941639..1942877 (+) 1239 WP_085391167.1 type II secretion system F family protein Machinery gene
  EL216_RS09115 (NCTC12228_01839) pilD 1942882..1943745 (+) 864 WP_085391166.1 A24 family peptidase Machinery gene
  EL216_RS09120 (NCTC12228_01840) coaE 1943749..1944369 (+) 621 WP_085391165.1 dephospho-CoA kinase -
  EL216_RS09125 (NCTC12228_01841) zapD 1944366..1945133 (+) 768 WP_085391164.1 cell division protein ZapD -
  EL216_RS09130 (NCTC12228_01842) yacG 1945137..1945325 (+) 189 WP_085391163.1 DNA gyrase inhibitor YacG -
  EL216_RS09135 (NCTC12228_01843) - 1945380..1945823 (-) 444 WP_085391162.1 TIGR01244 family sulfur transferase -
  EL216_RS09140 (NCTC12228_01844) - 1945891..1947648 (-) 1758 WP_085391161.1 M61 family metallopeptidase -

Sequence

Protein


Download         Length: 287 a.a.        Molecular weight: 31314.57 Da        Isoelectric Point: 8.2150

>NTDB_id=1122871 EL216_RS09115 WP_085391166.1 1942882..1943745(+) (pilD) [Neisseria animaloris strain NCTC12228]
MPEWMNLWAPFVVPISALFGLLVGSFLNVVIYRVPVMMERAWTAFAKEHLGQVLTEEEQQPFNLIKPDSRCPSCQSPVKA
WQNIPVLSYLMLGGKCGSCQTPISKRYPLVELLTGALFAVVAWKYGWSMTTLGGLILTAMLIALTFIDADTQYLPDQLTL
PLVWLGLLFNLNGIFVPLTSAVLGAVCGYMSLWLLCYAYKLLTGKIGMGGGDFKLLAALGAWLGVSVLPVLIFMAALIGL
VAAVIMRVAKGQQFAFGPSLAIAGWIIFIANEQVMTVVGWWLKASGF

Nucleotide


Download         Length: 864 bp        

>NTDB_id=1122871 EL216_RS09115 WP_085391166.1 1942882..1943745(+) (pilD) [Neisseria animaloris strain NCTC12228]
ATGCCTGAATGGATGAATCTCTGGGCACCCTTTGTGGTGCCTATTTCTGCATTATTTGGCTTGCTAGTAGGCAGTTTTTT
AAATGTAGTAATTTACCGTGTACCAGTAATGATGGAGCGTGCTTGGACGGCATTTGCAAAAGAGCATCTTGGTCAGGTTT
TGACCGAAGAAGAGCAACAGCCGTTTAATTTGATTAAACCTGATTCTCGTTGCCCTTCGTGCCAGTCCCCTGTAAAGGCT
TGGCAAAATATCCCAGTACTCAGTTACCTGATGCTCGGTGGAAAGTGTGGGTCATGTCAAACACCCATCAGCAAACGTTA
TCCTTTAGTAGAGTTGTTAACCGGTGCATTATTTGCAGTAGTTGCTTGGAAATATGGTTGGAGTATGACGACGTTGGGTG
GTTTAATTTTAACCGCTATGTTAATTGCTTTGACCTTTATTGATGCGGATACGCAATATCTTCCTGACCAACTTACACTA
CCTTTGGTTTGGCTGGGATTATTGTTTAATTTGAATGGTATTTTTGTGCCTCTAACGTCGGCTGTTTTAGGTGCGGTTTG
CGGCTACATGAGCTTGTGGCTGTTGTGCTACGCTTATAAATTGCTGACCGGAAAAATAGGCATGGGGGGCGGTGATTTTA
AATTACTCGCTGCTCTGGGAGCATGGTTGGGGGTTAGTGTGTTGCCCGTTTTGATATTTATGGCTGCTTTAATTGGTTTA
GTAGCCGCCGTTATCATGCGTGTGGCAAAAGGCCAGCAGTTTGCTTTCGGCCCCAGTTTGGCGATTGCAGGTTGGATAAT
ATTTATTGCTAATGAGCAGGTTATGACTGTAGTCGGATGGTGGCTGAAAGCTTCGGGATTCTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(18-125)

Type IV leader peptidase family (Peptidase_A24)

(135-243)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Neisseria gonorrhoeae MS11

72.302

96.864

0.7
  pilD Vibrio cholerae strain A1552

47.619

95.122

0.453
  pilD Acinetobacter baumannii D1279779

49.049

91.638

0.449
  pilD Acinetobacter nosocomialis M2

48.289

91.638

0.443
  pilD Vibrio campbellii strain DS40M4

46.84

93.728

0.439

Multiple sequence alignment