Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX/comX2/sigX2   Type   Regulator
Locus tag   EL147_RS08255 Genome accession   NZ_LR134341
Coordinates   1686561..1687103 (+) Length   180 a.a.
NCBI ID   WP_007894963.1    Uniprot ID   -
Organism   Streptococcus pseudoporcinus strain NCTC13786     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1681561..1692103
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL147_RS08255 (NCTC13786_01659) comX/sigX/comX2/sigX2 1686561..1687103 (+) 543 WP_007894963.1 sigma-70 family RNA polymerase sigma factor Regulator
  EL147_RS08260 (NCTC13786_01660) - 1687208..1687735 (+) 528 WP_007894902.1 YqeG family HAD IIIA-type phosphatase -
  EL147_RS08265 (NCTC13786_01661) yqeH 1687735..1688850 (+) 1116 WP_007894924.1 ribosome biogenesis GTPase YqeH -
  EL147_RS08270 (NCTC13786_01662) yhbY 1688910..1689218 (+) 309 WP_007894857.1 ribosome assembly RNA-binding protein YhbY -
  EL147_RS08275 (NCTC13786_01663) - 1689286..1689918 (+) 633 WP_007894856.1 nicotinate-nucleotide adenylyltransferase -
  EL147_RS08280 (NCTC13786_01664) yqeK 1689915..1690508 (+) 594 WP_007894937.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  EL147_RS10830 - 1690767..1690928 (+) 162 Protein_1554 hypothetical protein -
  EL147_RS08290 (NCTC13786_01665) rsfS 1691040..1691393 (+) 354 WP_007894851.1 ribosome silencing factor -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 21821.68 Da        Isoelectric Point: 10.1723

>NTDB_id=1122027 EL147_RS08255 WP_007894963.1 1686561..1687103(+) (comX/sigX/comX2/sigX2) [Streptococcus pseudoporcinus strain NCTC13786]
MFFFVTFFYNMTIILKEGVIKKPMYELNQLFSQVKPIVFKLMRTYFIQLWETDDWLQEGRLVLYSLIESNPELLTNQKKL
LVYFKTKFSSHIKDTIRHQESFKRKLNRLPYQEISEVSHRIPEKGLILDDFVAYQSIIEELKPYLTMKEQNQFKALLRGE
RFSGRKSLLRKLKPFFIDFQ

Nucleotide


Download         Length: 543 bp        

>NTDB_id=1122027 EL147_RS08255 WP_007894963.1 1686561..1687103(+) (comX/sigX/comX2/sigX2) [Streptococcus pseudoporcinus strain NCTC13786]
ATGTTCTTTTTTGTAACTTTCTTTTACAATATGACTATCATTTTGAAAGAAGGTGTTATTAAAAAGCCTATGTATGAATT
AAATCAACTATTTAGCCAAGTAAAGCCAATTGTTTTTAAGCTAATGCGGACCTATTTTATTCAATTATGGGAAACTGATG
ATTGGCTACAAGAAGGACGTTTAGTTCTATATAGTCTGATCGAAAGTAATCCTGAATTACTAACTAATCAAAAAAAGTTA
CTGGTATATTTTAAAACTAAATTTTCGTCCCATATAAAAGACACTATTCGTCATCAAGAATCTTTCAAACGAAAATTAAA
TCGCTTACCATATCAAGAAATTAGTGAAGTTTCTCATCGGATACCGGAAAAGGGACTCATCCTTGATGATTTTGTTGCTT
ATCAGTCAATTATTGAGGAATTGAAGCCATATTTGACCATGAAAGAACAAAATCAGTTTAAAGCATTGCTAAGAGGAGAG
CGCTTTTCTGGGCGAAAATCTTTATTGCGCAAGTTAAAGCCTTTCTTTATAGACTTTCAATAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS8232

51.977

98.333

0.511
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS8232

51.977

98.333

0.511
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS315

51.412

98.333

0.506
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS315

51.412

98.333

0.506
  comX/sigX/comX2/sigX2 Streptococcus pyogenes JRS4

51.412

98.333

0.506
  comX/sigX/comX1/sigX1 Streptococcus pyogenes JRS4

51.412

98.333

0.506
  comX/sigX Streptococcus infantarius subsp. infantarius ATCC BAA-102

47.436

86.667

0.411
  comR/comR2 Streptococcus gordonii str. Challis substr. CH1

47.333

83.333

0.394
  comR/comR1 Streptococcus gordonii str. Challis substr. CH1

47.333

83.333

0.394
  comX/sigX Streptococcus mutans UA159

43.046

83.889

0.361

Multiple sequence alignment