Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYA   Type   Machinery gene
Locus tag   EL133_RS10255 Genome accession   NZ_LR134323
Coordinates   1983532..1983963 (-) Length   143 a.a.
NCBI ID   WP_006740712.1    Uniprot ID   -
Organism   Streptococcus urinalis strain NCTC13766     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1978532..1988963
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL133_RS10230 (NCTC13766_02110) - 1980710..1981627 (+) 918 WP_006740166.1 IS1595 family transposase -
  EL133_RS10235 (NCTC13766_02111) - 1981617..1982048 (+) 432 WP_006739697.1 hypothetical protein -
  EL133_RS10240 (NCTC13766_02112) - 1982052..1982276 (+) 225 WP_006739806.1 hypothetical protein -
  EL133_RS10245 (NCTC13766_02113) - 1982260..1982547 (+) 288 WP_006740130.1 hypothetical protein -
  EL133_RS10250 (NCTC13766_02114) - 1982540..1983082 (+) 543 WP_006738598.1 DUF6036 family nucleotidyltransferase -
  EL133_RS10255 (NCTC13766_02115) comYA 1983532..1983963 (-) 432 WP_006740712.1 ATPase, T2SS/T4P/T4SS family Machinery gene
  EL133_RS10260 (NCTC13766_02116) - 1984027..1984389 (-) 363 WP_006739030.1 DUF1033 family protein -
  EL133_RS10265 (NCTC13766_02117) rpoC 1984498..1988133 (-) 3636 WP_006739350.1 DNA-directed RNA polymerase subunit beta' -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16742.36 Da        Isoelectric Point: 9.2750

>NTDB_id=1121553 EL133_RS10255 WP_006740712.1 1983532..1983963(-) (comYA) [Streptococcus urinalis strain NCTC13766]
MVQNLAKEIIFEAIRLDAQDIYMIPKDNNYNLLMRINDERRLVSVHQCDSMASIISHFKFVSGMNIGEKRRIQIGSCDYF
YGEEKVSLRLSSVGDYQNRESLVIRLLHKKDKDLYYWFDNRNRLLTAIKSRGLYLFSGPVGVL

Nucleotide


Download         Length: 432 bp        

>NTDB_id=1121553 EL133_RS10255 WP_006740712.1 1983532..1983963(-) (comYA) [Streptococcus urinalis strain NCTC13766]
GTGGTTCAAAATTTAGCAAAGGAAATCATATTTGAAGCAATAAGATTAGATGCACAAGATATTTATATGATTCCTAAAGA
TAATAACTATAATTTACTAATGCGAATTAATGATGAGAGGAGACTTGTTAGTGTTCATCAGTGTGATAGCATGGCTAGTA
TTATTAGTCACTTTAAATTTGTCTCAGGAATGAATATTGGAGAAAAACGACGTATCCAAATTGGTTCATGTGACTATTTT
TATGGAGAAGAAAAGGTTTCACTAAGACTTTCTAGTGTTGGCGATTATCAAAATAGAGAAAGTCTTGTTATCCGATTACT
ACATAAAAAAGATAAAGATTTATATTATTGGTTTGATAATAGAAATCGACTGTTAACAGCGATTAAAAGTAGAGGGTTAT
ATTTATTTTCAGGACCAGTTGGAGTATTATGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(8-139)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYA Streptococcus mutans UA159

61.972

99.301

0.615
  comYA Streptococcus mutans UA140

61.972

99.301

0.615
  comYA Streptococcus gordonii str. Challis substr. CH1

56.028

98.601

0.552
  comGA/cglA/cilD Streptococcus mitis NCTC 12261

55.319

98.601

0.545
  comGA/cglA/cilD Streptococcus pneumoniae Rx1

54.61

98.601

0.538
  comGA/cglA/cilD Streptococcus pneumoniae D39

54.61

98.601

0.538
  comGA/cglA/cilD Streptococcus pneumoniae R6

54.61

98.601

0.538
  comGA/cglA/cilD Streptococcus pneumoniae TIGR4

54.61

98.601

0.538
  comGA/cglA Streptococcus sobrinus strain NIDR 6715-7

53.901

98.601

0.531
  comGA Lactococcus lactis subsp. cremoris KW2

45.07

99.301

0.448

Multiple sequence alignment