Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   EL114_RS00895 Genome accession   NZ_LR134297
Coordinates   193769..195016 (+) Length   415 a.a.
NCBI ID   WP_126342878.1    Uniprot ID   -
Organism   Enterococcus hirae strain NCTC12368     
Function   require for competence (predicted from homology)   
Unclear

Genomic Context

Location: 188769..200016
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL114_RS00875 (NCTC12368_00178) yfmF 189035..190303 (+) 1269 WP_088762081.1 EF-P 5-aminopentanol modification-associated protein YfmF -
  EL114_RS00880 (NCTC12368_00179) yfmH 190296..191585 (+) 1290 WP_126342875.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  EL114_RS00885 (NCTC12368_00180) - 191816..192706 (+) 891 WP_010720624.1 RodZ domain-containing protein -
  EL114_RS00890 (NCTC12368_00181) pgsA 192875..193453 (+) 579 WP_010720623.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  EL114_RS00895 (NCTC12368_00182) cinA 193769..195016 (+) 1248 WP_126342878.1 competence/damage-inducible protein A Machinery gene
  EL114_RS00900 (NCTC12368_00183) recA 195122..196162 (+) 1041 WP_010720621.1 recombinase RecA Machinery gene
  EL114_RS00905 (NCTC12368_00184) rny 196732..198288 (+) 1557 WP_010720620.1 ribonuclease Y -

Sequence

Protein


Download         Length: 415 a.a.        Molecular weight: 45739.18 Da        Isoelectric Point: 4.8478

>NTDB_id=1120648 EL114_RS00895 WP_126342878.1 193769..195016(+) (cinA) [Enterococcus hirae strain NCTC12368]
MKSEIIAVGTELLLGQVVNTNATFLSEQLADLGIDVYYQTVVGDNPDRLESLLQLAETRSDLIILCGGLGPTEDDLTKEV
TAKHLGKELIQNTEGYKKLLAFFETTKRKMTENNLQQSQIIDGGIALPNRTGLALGTFYQTADHVYLLLPGPPSELKPMF
IEQARPLLEQNFPSEEMLISKVLRFYGIGESQLVTELKDLIETQINPTIAPYAKPNEVTLRLTVKTKDKHAGNQALLALE
EKVLARVGEYFYGYGDDNSLPKVVVELLKERNQTITAAESLTAGAFQSALGEISGVSQVFPGGFITYSLETKAEFLHIDD
ALLKQHGTVSQECAEQMAIQARNLAKTDYAISFTGVAGPDTLEGQPAGTVWIAVATSEGEVISQKYQFTRDRSHIRNSAV
MQGFDLIRRQLLRKK

Nucleotide


Download         Length: 1248 bp        

>NTDB_id=1120648 EL114_RS00895 WP_126342878.1 193769..195016(+) (cinA) [Enterococcus hirae strain NCTC12368]
ATGAAATCAGAAATCATAGCAGTAGGGACAGAACTTTTACTAGGACAAGTAGTCAACACGAATGCCACGTTTTTATCCGA
ACAGTTAGCAGACCTCGGGATTGATGTGTATTATCAAACGGTGGTTGGTGATAATCCCGACCGCTTAGAATCATTACTCC
AATTAGCAGAAACCAGAAGTGACTTGATCATTTTATGTGGAGGGTTGGGACCGACAGAAGACGACCTGACGAAAGAAGTT
ACTGCGAAACATCTAGGGAAAGAATTGATCCAAAACACCGAAGGCTATAAAAAATTGTTAGCATTTTTTGAAACGACCAA
GCGTAAAATGACTGAAAATAATTTACAACAATCACAAATCATCGATGGGGGGATTGCTTTACCTAATCGCACAGGCTTAG
CATTAGGTACGTTCTATCAAACAGCGGACCATGTCTATCTCTTGTTACCTGGACCACCGAGTGAATTAAAGCCAATGTTC
ATTGAACAAGCTCGCCCATTATTGGAGCAAAACTTTCCATCTGAAGAAATGCTGATCTCAAAAGTTTTACGTTTTTACGG
TATCGGGGAATCCCAACTAGTCACAGAATTAAAAGACTTGATTGAAACACAGATCAACCCAACGATTGCCCCTTACGCAA
AACCTAACGAAGTCACTTTACGATTAACTGTGAAGACCAAAGACAAACATGCAGGAAACCAAGCCTTACTTGCTTTGGAA
GAAAAAGTATTGGCGAGAGTAGGTGAGTACTTCTATGGATATGGTGATGATAATTCATTGCCTAAAGTGGTCGTAGAATT
ATTAAAGGAAAGAAACCAAACAATAACTGCAGCAGAAAGTTTGACTGCTGGAGCCTTTCAATCAGCTTTGGGAGAGATCT
CTGGTGTTTCTCAAGTCTTCCCAGGAGGCTTCATTACCTATTCTTTAGAAACTAAAGCAGAATTTTTACACATCGATGAT
GCACTATTGAAGCAGCATGGAACCGTCAGCCAAGAATGTGCAGAACAAATGGCTATCCAAGCACGTAATTTAGCAAAAAC
AGATTATGCGATTTCGTTTACTGGAGTGGCTGGACCAGATACCTTAGAAGGACAGCCAGCTGGAACAGTTTGGATCGCGG
TTGCAACAAGTGAAGGGGAGGTCATTTCGCAGAAATACCAATTTACCAGAGACCGTTCTCATATAAGGAATAGCGCAGTA
ATGCAAGGATTTGATCTCATTAGAAGACAACTATTAAGAAAAAAATAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Competence-damaged protein (CinA)

(258-411)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mutans UA159

53.828

100

0.542
  cinA Streptococcus pneumoniae TIGR4

52.619

100

0.533
  cinA Streptococcus pneumoniae Rx1

52.381

100

0.53
  cinA Streptococcus pneumoniae R6

52.381

100

0.53
  cinA Streptococcus mitis SK321

52.381

100

0.53
  cinA Streptococcus pneumoniae D39

52.381

100

0.53
  cinA Streptococcus mitis NCTC 12261

51.905

100

0.525
  cinA Bacillus subtilis subsp. subtilis str. 168

47.458

99.518

0.472
  cinA Streptococcus suis isolate S10

42.857

100

0.434

Multiple sequence alignment