Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   EL081_RS09640 Genome accession   NZ_LR134266
Coordinates   1920554..1921822 (-) Length   422 a.a.
NCBI ID   WP_126404972.1    Uniprot ID   -
Organism   Streptococcus viridans strain NCTC3166     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1915554..1926822
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL081_RS09605 (NCTC3166_01897) - 1916383..1916694 (-) 312 WP_006595405.1 DUF1292 domain-containing protein -
  EL081_RS09610 (NCTC3166_01898) ruvX 1916712..1917131 (-) 420 WP_023027379.1 Holliday junction resolvase RuvX -
  EL081_RS09615 (NCTC3166_01899) - 1917131..1917397 (-) 267 WP_006597020.1 IreB family regulatory phosphoprotein -
  EL081_RS09620 (NCTC3166_01900) - 1917540..1918091 (-) 552 WP_023027380.1 SP0191 family lipoprotein -
  EL081_RS09625 (NCTC3166_01901) - 1918101..1918694 (-) 594 WP_125335101.1 SP0191 family lipoprotein -
  EL081_RS09630 (NCTC3166_01902) spx 1918879..1919277 (-) 399 WP_006595399.1 transcriptional regulator Spx -
  EL081_RS09635 (NCTC3166_01903) recA 1919365..1920507 (-) 1143 WP_125335103.1 recombinase RecA Machinery gene
  EL081_RS09640 (NCTC3166_01904) cinA 1920554..1921822 (-) 1269 WP_126404972.1 competence/damage-inducible protein A Machinery gene
  EL081_RS09645 (NCTC3166_01905) - 1921906..1922472 (-) 567 WP_126404973.1 DNA-3-methyladenine glycosylase I -
  EL081_RS09650 (NCTC3166_01906) ruvA 1922482..1923075 (-) 594 WP_048691877.1 Holliday junction branch migration protein RuvA -
  EL081_RS09655 (NCTC3166_01907) mutL 1923096..1925045 (-) 1950 WP_126404974.1 DNA mismatch repair endonuclease MutL -
  EL081_RS09660 (NCTC3166_01908) - 1925298..1925738 (+) 441 WP_040802875.1 LytTR family DNA-binding domain-containing protein -
  EL081_RS09665 (NCTC3166_01909) - 1925732..1926190 (+) 459 WP_048715642.1 DUF3021 domain-containing protein -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 45058.46 Da        Isoelectric Point: 4.7831

>NTDB_id=1119590 EL081_RS09640 WP_126404972.1 1920554..1921822(-) (cinA) [Streptococcus viridans strain NCTC3166]
MKAEIIAVGTEILTGQIVNTNAQFLSEKLAGLGIDVYFQTAVGDNADRLLSVLAIARDRSDLVILTGGLGPTEDDLTKQT
LAQFLGRDLTFDPEAMAKLDRFFASRPDHVRTPNNLRQAQIVTGSTPLQNLTGLAVGGLIEVEGVSYVVLPGPPSELKPM
VNDELVPLLATGEKLYSRVLRFFGIGESQLVTVLADVIDGQTDPTVAPYAKTGEVTLRLSTKAASQEQADQKLDQLEQVI
LRHETLDGQALSQLFYGYGDDNSLAKVAFELLRERGLTLTAAESLTAGMFQSTLANFSGASAVLPGGFVTYSIEEKSKML
QIPLAELQEHGVVSAHTAERMAAQAHLLTGADYGVSLTGVAGPDSLEGHPAGTVFIGIAGPKGVQSIKVNIAGRSRMDVR
KVAVLHAFNLVRRTVLLDENLL

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=1119590 EL081_RS09640 WP_126404972.1 1920554..1921822(-) (cinA) [Streptococcus viridans strain NCTC3166]
ATGAAAGCAGAGATCATTGCAGTAGGAACTGAAATTCTCACAGGACAGATTGTCAATACCAATGCGCAATTCTTATCAGA
AAAGTTGGCAGGTCTAGGGATCGACGTTTATTTCCAAACTGCAGTTGGAGATAATGCCGATCGTCTCTTGTCTGTTCTTG
CAATCGCGCGTGATCGAAGTGATCTCGTCATCCTCACGGGAGGACTCGGACCGACCGAAGACGACCTGACCAAGCAGACC
CTAGCGCAGTTCTTGGGTAGAGACCTGACCTTTGATCCAGAAGCAATGGCCAAGTTGGATCGCTTCTTTGCCAGTCGGCC
AGACCATGTCCGAACTCCCAACAATCTGAGACAAGCGCAAATAGTGACAGGCTCAACACCGCTCCAAAATCTGACCGGTT
TGGCAGTGGGAGGGCTGATTGAAGTAGAGGGTGTTAGCTATGTCGTCTTGCCTGGTCCCCCTAGTGAATTGAAACCCATG
GTTAATGATGAGTTAGTGCCCTTGCTAGCCACAGGCGAGAAGCTCTACTCACGTGTCTTGCGCTTCTTTGGGATTGGGGA
AAGCCAGCTGGTAACCGTTCTAGCCGATGTGATTGATGGCCAGACGGACCCGACGGTGGCTCCTTATGCTAAGACCGGAG
AAGTGACCTTGCGCTTGTCAACCAAGGCTGCATCACAAGAGCAGGCTGATCAGAAATTGGATCAGTTGGAGCAAGTGATC
CTCCGTCATGAGACTTTGGATGGTCAAGCCTTGAGCCAGCTCTTCTATGGCTATGGTGATGACAATTCCCTAGCCAAGGT
TGCTTTTGAACTCTTACGAGAGAGAGGTTTGACCCTAACCGCAGCAGAGAGCTTGACGGCCGGGATGTTCCAGTCGACTC
TGGCTAATTTTTCAGGAGCCTCAGCAGTCCTACCAGGAGGTTTCGTCACTTACAGCATAGAGGAAAAGAGCAAAATGCTC
CAAATCCCCCTAGCTGAGTTGCAAGAACATGGAGTGGTCTCTGCCCATACAGCTGAGCGGATGGCAGCGCAAGCCCATCT
CTTAACAGGGGCTGACTATGGAGTCAGTCTGACAGGTGTTGCTGGTCCAGACAGTCTAGAAGGCCACCCAGCAGGGACCG
TTTTTATTGGAATTGCGGGTCCTAAAGGAGTCCAATCAATCAAGGTCAATATCGCTGGCCGGAGTCGTATGGATGTTCGT
AAAGTTGCAGTCCTCCATGCCTTTAATCTGGTACGCCGGACTGTATTATTAGATGAAAATTTGCTATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(262-414)

Damage-inducible protein CinA KH domain (CinA_KH)

(177-240)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

72.488

99.052

0.718
  cinA Streptococcus mitis NCTC 12261

71.292

99.052

0.706
  cinA Streptococcus pneumoniae TIGR4

71.292

99.052

0.706
  cinA Streptococcus pneumoniae Rx1

71.292

99.052

0.706
  cinA Streptococcus pneumoniae R6

71.292

99.052

0.706
  cinA Streptococcus pneumoniae D39

71.053

99.052

0.704
  cinA Streptococcus mutans UA159

69.976

100

0.701
  cinA Streptococcus suis isolate S10

54.846

100

0.55
  cinA Bacillus subtilis subsp. subtilis str. 168

47.101

98.104

0.462

Multiple sequence alignment