Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   EL081_RS07530 Genome accession   NZ_LR134266
Coordinates   1439665..1440255 (-) Length   196 a.a.
NCBI ID   WP_126404667.1    Uniprot ID   -
Organism   Streptococcus viridans strain NCTC3166     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1434665..1445255
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL081_RS07505 (NCTC3166_01480) - 1435334..1436098 (-) 765 WP_126404664.1 ABC transporter ATP-binding protein -
  EL081_RS07510 (NCTC3166_01481) - 1436098..1437045 (-) 948 WP_006595829.1 branched-chain amino acid ABC transporter permease -
  EL081_RS07515 (NCTC3166_01482) - 1437049..1437918 (-) 870 WP_009731472.1 branched-chain amino acid ABC transporter permease -
  EL081_RS07520 (NCTC3166_01483) - 1438000..1439157 (-) 1158 WP_126404665.1 ABC transporter substrate-binding protein -
  EL081_RS07525 (NCTC3166_01484) - 1439252..1439536 (-) 285 WP_126404666.1 DUF2129 domain-containing protein -
  EL081_RS07530 (NCTC3166_01485) clpP 1439665..1440255 (-) 591 WP_126404667.1 ATP-dependent Clp protease proteolytic subunit Regulator
  EL081_RS07535 (NCTC3166_01486) upp 1440418..1441047 (-) 630 WP_126404668.1 uracil phosphoribosyltransferase -
  EL081_RS07540 (NCTC3166_01487) mgtA 1441148..1443808 (-) 2661 WP_126404669.1 magnesium-translocating P-type ATPase -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21503.63 Da        Isoelectric Point: 5.0054

>NTDB_id=1119584 EL081_RS07530 WP_126404667.1 1439665..1440255(-) (clpP) [Streptococcus viridans strain NCTC3166]
MIPVVIEQTSRGERSYDIYSRLLKDRIIMVTGPVEDQMANSIIAQLLFLDAQDNTKDIYMYINTPGGSVSAGLAIVDTMN
FIKSDVQTIVMGIAASMGTVIASSGTKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKTRHRLEKILAENSGQ
TIKKIHADAERDNWMTAEETLAYGFIDEIMTNNNIG

Nucleotide


Download         Length: 591 bp        

>NTDB_id=1119584 EL081_RS07530 WP_126404667.1 1439665..1440255(-) (clpP) [Streptococcus viridans strain NCTC3166]
ATGATTCCAGTAGTAATTGAACAAACTAGTCGTGGTGAACGCTCATACGACATATACTCACGCCTCTTAAAAGACCGTAT
TATCATGGTGACAGGACCGGTAGAAGACCAAATGGCCAATTCGATTATTGCCCAATTGCTCTTCTTGGATGCCCAAGATA
ATACCAAAGATATCTATATGTATATCAATACGCCAGGAGGCTCTGTCTCTGCAGGTTTGGCAATCGTCGACACCATGAAC
TTTATCAAATCAGATGTCCAAACCATTGTTATGGGGATAGCAGCTTCAATGGGGACTGTGATTGCATCAAGTGGTACTAA
AGGCAAACGCTTCATGTTGCCAAATGCTGAGTACATGATCCACCAACCAATGGGTGGTACTGGTGGCGGTACCCAACAAA
CGGATATGGCCATTGCAGCAGAACACCTCTTGAAAACACGTCACAGATTGGAAAAAATCTTGGCAGAAAATTCAGGTCAA
ACCATCAAGAAAATCCACGCTGATGCGGAAAGAGATAATTGGATGACTGCAGAAGAAACGTTAGCTTATGGTTTCATCGA
TGAAATCATGACTAACAACAATATCGGATAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(11-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Streptococcus pyogenes MGAS315

91.282

99.49

0.908
  clpP Streptococcus pyogenes JRS4

91.282

99.49

0.908
  clpP Streptococcus thermophilus LMG 18311

89.744

99.49

0.893
  clpP Streptococcus thermophilus LMD-9

89.744

99.49

0.893
  clpP Streptococcus pneumoniae R6

89.231

99.49

0.888
  clpP Streptococcus pneumoniae Rx1

89.231

99.49

0.888
  clpP Streptococcus pneumoniae D39

89.231

99.49

0.888
  clpP Streptococcus pneumoniae TIGR4

89.231

99.49

0.888
  clpP Streptococcus mutans UA159

88.205

99.49

0.878
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

83.59

99.49

0.832
  clpP Lactococcus lactis subsp. cremoris KW2

83.077

99.49

0.827
  clpP Bacillus subtilis subsp. subtilis str. 168

57.812

97.959

0.566
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

56.477

98.469

0.556

Multiple sequence alignment