Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   EL071_RS03080 Genome accession   NZ_LR134265
Coordinates   591901..593160 (-) Length   419 a.a.
NCBI ID   WP_115356506.1    Uniprot ID   A0AB38VJM1
Organism   Streptococcus agalactiae strain NCTC8184     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 586901..598160
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL071_RS03045 (NCTC8184_00589) - 587051..588592 (-) 1542 WP_000230040.1 membrane protein -
  EL071_RS12115 (NCTC8184_00590) - 588638..588760 (-) 123 WP_001285712.1 hypothetical protein -
  EL071_RS03055 (NCTC8184_00591) - 588844..589161 (-) 318 WP_000940933.1 DUF1292 domain-containing protein -
  EL071_RS03060 (NCTC8184_00592) ruvX 589187..589606 (-) 420 WP_001222109.1 Holliday junction resolvase RuvX -
  EL071_RS03065 (NCTC8184_00593) - 589606..589872 (-) 267 WP_000507056.1 IreB family regulatory phosphoprotein -
  EL071_RS03070 (NCTC8184_00594) spx 590074..590472 (-) 399 WP_000591161.1 transcriptional regulator Spx -
  EL071_RS03075 (NCTC8184_00595) recA 590688..591827 (-) 1140 WP_115356507.1 recombinase RecA Machinery gene
  EL071_RS03080 (NCTC8184_00596) cinA 591901..593160 (-) 1260 WP_115356506.1 competence/damage-inducible protein A Machinery gene
  EL071_RS03085 (NCTC8184_00597) - 593249..593800 (-) 552 WP_115356505.1 DNA-3-methyladenine glycosylase I -
  EL071_RS03090 (NCTC8184_00598) ruvA 593823..594413 (-) 591 WP_000272490.1 Holliday junction branch migration protein RuvA -
  EL071_RS03095 (NCTC8184_00599) - 594415..595647 (-) 1233 WP_164993766.1 MFS transporter -
  EL071_RS03100 (NCTC8184_00600) mutL 595679..597652 (-) 1974 WP_164993767.1 DNA mismatch repair endonuclease MutL -
  EL071_RS03110 - 597878..598081 (+) 204 WP_000191849.1 cold shock domain-containing protein -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45436.27 Da        Isoelectric Point: 5.8937

>NTDB_id=1119497 EL071_RS03080 WP_115356506.1 591901..593160(-) (cinA) [Streptococcus agalactiae strain NCTC8184]
MRAEIIAVGTEILTGQIVNTNAQFLSEKMAELGIDIYFQTAVGDNEERLLSLLDIASQRSQLVILCGGLGPTEDDLTKQT
LAKFLGKSLTVDLLASQKLDRFFASRPQFARTPNNERQAQLVEGLIPLQNPTGLAVGGIVTSKGVQYMVLPGPPSELKPM
VMEQAVPILSNNGTKLYSRVLRFFGIGESQLVTILEDIIKNQTDPTIAPYAKVGEVTLRLSTKAENQDEADFKLDSLEKE
ILALKTLDNRKLKDLLYGYGDNNSMARTVLELLKVQNKTITAAESLTAGLFQSQLAEFSGASQVFNGGFTTYSMEAKSQL
LGIPKKKLQEYGVVSHFTAEAMAQQARQLLKADFGIGLTGVAGPDELEGYPAGTVFIGIATPEGVSSIKVSIGGKSRSDV
RHISTLHAFDLVRRALLKI

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=1119497 EL071_RS03080 WP_115356506.1 591901..593160(-) (cinA) [Streptococcus agalactiae strain NCTC8184]
GTGAGGGCTGAAATTATCGCTGTAGGAACAGAAATTTTAACAGGACAGATCGTTAATACAAACGCACAATTTTTGTCGGA
GAAAATGGCAGAATTGGGAATTGATATTTATTTCCAGACAGCTGTAGGAGACAATGAGGAACGTTTATTATCGCTTTTAG
ATATAGCTAGTCAGCGCAGTCAATTGGTTATCCTATGTGGTGGACTTGGACCTACAGAGGATGATTTAACGAAGCAAACT
TTGGCTAAATTTTTAGGTAAATCATTAACAGTGGATTTATTAGCTAGTCAAAAATTGGATCGTTTTTTTGCAAGTCGTCC
TCAGTTTGCTAGAACGCCGAATAATGAACGACAAGCTCAATTGGTTGAAGGCTTAATACCTCTACAAAACCCTACTGGTC
TAGCTGTTGGTGGTATCGTTACATCTAAGGGAGTCCAATATATGGTTTTACCAGGTCCGCCTAGTGAATTAAAGCCAATG
GTTATGGAGCAGGCGGTACCTATTTTGTCAAATAATGGCACAAAATTATATTCACGTGTATTGAGATTCTTTGGTATTGG
TGAGAGTCAGTTAGTCACAATCTTAGAAGACATAATTAAGAATCAGACAGATCCAACTATAGCACCATATGCAAAGGTTG
GTGAGGTAACTTTAAGGTTATCAACGAAAGCTGAAAATCAGGATGAAGCTGACTTTAAATTAGATAGCTTAGAAAAAGAA
ATACTTGCTCTTAAGACATTAGATAACCGTAAATTAAAAGATTTATTATATGGTTATGGTGATAATAATAGTATGGCACG
TACTGTTTTAGAATTATTGAAAGTACAAAATAAAACGATTACTGCCGCAGAGAGCTTAACAGCAGGGTTATTTCAATCTC
AGTTAGCAGAATTTTCTGGTGCTTCGCAAGTTTTTAATGGTGGTTTTACGACCTATAGTATGGAAGCAAAATCACAACTT
CTCGGCATCCCTAAGAAAAAATTGCAAGAATACGGAGTTGTCAGTCATTTTACAGCTGAGGCAATGGCTCAGCAAGCTCG
CCAACTTTTAAAAGCAGATTTTGGTATCGGTTTAACGGGAGTTGCTGGTCCTGATGAGTTGGAAGGATACCCTGCAGGTA
CAGTTTTTATTGGGATTGCAACCCCTGAAGGCGTTTCTTCTATTAAAGTATCGATTGGAGGGAAGAGCCGCTCAGATGTC
CGTCATATCAGTACTTTACATGCTTTTGACCTGGTGCGTAGGGCTTTATTAAAGATATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(178-241)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Competence-damaged protein (CinA)

(263-415)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

71.703

99.523

0.714
  cinA Streptococcus mitis NCTC 12261

71.463

99.523

0.711
  cinA Streptococcus pneumoniae TIGR4

70.264

99.523

0.699
  cinA Streptococcus pneumoniae Rx1

70.264

99.523

0.699
  cinA Streptococcus pneumoniae R6

70.264

99.523

0.699
  cinA Streptococcus pneumoniae D39

70.024

99.523

0.697
  cinA Streptococcus mutans UA159

68.106

99.523

0.678
  cinA Streptococcus suis isolate S10

54.808

99.284

0.544
  cinA Bacillus subtilis subsp. subtilis str. 168

43.78

99.761

0.437

Multiple sequence alignment