Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   EJN10_RS08275 Genome accession   NZ_LR130528
Coordinates   1735903..1737120 (-) Length   405 a.a.
NCBI ID   WP_124033666.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa isolate paerg000     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1730903..1742120
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EJN10_RS08230 (BANRA_01599) - 1731087..1731536 (-) 450 WP_003161439.1 MOSC domain-containing protein -
  EJN10_RS08235 (BANRA_01600) - 1731533..1732162 (-) 630 WP_003120948.1 DUF1780 domain-containing protein -
  EJN10_RS08240 (BANRA_01601) - 1732295..1732720 (+) 426 WP_003103865.1 GNAT family N-acetyltransferase -
  EJN10_RS08245 (BANRA_01602) - 1732717..1733187 (+) 471 WP_019486073.1 hypothetical protein -
  EJN10_RS08250 (BANRA_01603) - 1733184..1733873 (+) 690 WP_124033668.1 energy-coupling factor ABC transporter permease -
  EJN10_RS08255 (BANRA_01604) - 1733979..1734188 (+) 210 WP_003094660.1 hypothetical protein -
  EJN10_RS08260 (BANRA_01605) yacG 1734225..1734425 (-) 201 WP_003094656.1 DNA gyrase inhibitor YacG -
  EJN10_RS08265 (BANRA_01606) coaE 1734422..1735033 (-) 612 WP_023114838.1 dephospho-CoA kinase -
  EJN10_RS08270 (BANRA_01607) pilD 1735030..1735902 (-) 873 WP_003107301.1 type IV prepilin peptidase/methyltransferase PilD Machinery gene
  EJN10_RS08275 (BANRA_01608) pilC 1735903..1737120 (-) 1218 WP_124033666.1 type II secretion system F family protein Machinery gene
  EJN10_RS08280 (BANRA_01609) pilB 1737124..1738824 (-) 1701 WP_021205142.1 type IV-A pilus assembly ATPase PilB Machinery gene
  EJN10_RS08285 (BANRA_01610) - 1739055..1739519 (+) 465 WP_021205141.1 pilin -
  EJN10_RS08290 (BANRA_01611) - 1739601..1740980 (+) 1380 WP_223719891.1 O-antigen ligase family protein -
  EJN10_RS08300 (BANRA_01613) nadC 1741161..1742009 (-) 849 WP_003161760.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 43940.77 Da        Isoelectric Point: 9.8959

>NTDB_id=1117018 EJN10_RS08275 WP_124033666.1 1735903..1737120(-) (pilC) [Pseudomonas aeruginosa isolate paerg000]
MADKALKTSVFVWEGTDKKGTKVKGELSSQNPTLVKAQLRKQGITPVKVRKKGISLLGAGKKIKPMDIALFTRQMSTMMA
AGVPLLQSFDIISEGFDNPNMRKLVEEIKQEVAGGNSLANSLRKKPQYFDSLYCNLVDAGEQSGALETLLDRVATYKEKT
EALKAKIKKAMTYPIAVIVVAIIVSAILLIKVVPQFQSVFEGFGAELPAFTQMVINISNVLQEWWLLVLLMMGGAGFLLN
HAYKRSEKFRDATDRTVLKLPIVGAILYKSAVARYARTLSTTFAAGVPLVEALDSVSGATGNVVFRGAVGKIKQDVSTGM
QLNFSMRTTNIFPSMAIQMTAIGEESGALDDMLAKVAGFYEQEVDNAVDNLTALMEPMIMAVLGVLVGGLIIAMYLPIFQ
LGNVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=1117018 EJN10_RS08275 WP_124033666.1 1735903..1737120(-) (pilC) [Pseudomonas aeruginosa isolate paerg000]
ATGGCGGACAAAGCGTTAAAGACCAGTGTCTTCGTATGGGAAGGCACTGACAAGAAAGGCACCAAGGTCAAGGGCGAGCT
GTCCAGCCAGAACCCGACCCTGGTCAAGGCGCAACTGCGCAAGCAGGGCATCACGCCGGTCAAGGTCCGCAAGAAAGGCA
TCTCCCTGCTGGGGGCGGGGAAGAAGATCAAGCCTATGGACATCGCCCTGTTCACCCGCCAGATGTCCACCATGATGGCC
GCCGGCGTGCCGCTGCTGCAGTCGTTCGACATCATCAGCGAAGGCTTCGACAATCCGAACATGCGCAAGCTGGTGGAGGA
GATCAAGCAGGAAGTTGCCGGCGGCAACAGCCTGGCCAACTCGCTGCGCAAGAAGCCGCAGTACTTCGACTCGCTCTACT
GCAACCTGGTGGACGCCGGCGAACAATCCGGCGCCCTGGAAACCCTGCTCGACCGGGTCGCCACCTACAAGGAAAAGACC
GAGGCGCTGAAGGCCAAGATCAAGAAGGCCATGACCTACCCGATCGCGGTGATCGTCGTCGCCATCATCGTTTCGGCGAT
CCTACTGATCAAGGTGGTGCCGCAGTTCCAGTCGGTGTTCGAGGGCTTCGGCGCCGAACTGCCGGCCTTCACCCAAATGG
TCATCAATATCTCCAACGTGCTCCAGGAATGGTGGCTCCTGGTACTGCTGATGATGGGCGGCGCCGGCTTCCTGCTGAAC
CACGCCTACAAGCGTTCGGAGAAGTTCCGCGACGCCACCGACCGCACGGTACTGAAGCTGCCTATCGTCGGCGCCATCCT
CTACAAATCCGCCGTGGCACGCTACGCGCGGACGCTGTCGACCACCTTCGCCGCCGGCGTGCCATTGGTGGAAGCCCTCG
ACTCGGTTTCCGGCGCCACCGGCAACGTGGTGTTCAGGGGCGCGGTGGGCAAGATCAAGCAGGACGTGTCCACCGGCATG
CAGCTGAACTTCTCCATGCGCACCACCAACATCTTCCCCAGCATGGCCATCCAGATGACCGCCATCGGCGAGGAGTCGGG
CGCGCTGGACGACATGCTGGCCAAGGTCGCTGGCTTCTACGAGCAGGAAGTGGATAATGCCGTGGACAACCTGACCGCCC
TGATGGAACCGATGATCATGGCGGTCCTCGGGGTCCTGGTCGGTGGCCTGATCATCGCCATGTACCTGCCGATCTTCCAG
CTGGGCAACGTCGTCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(276-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

78.765

100

0.788
  pilC Acinetobacter baylyi ADP1

61.275

100

0.617
  pilC Acinetobacter baumannii D1279779

60.644

99.753

0.605
  pilC Legionella pneumophila strain ERS1305867

54.293

97.778

0.531
  pilG Neisseria gonorrhoeae MS11

46.287

99.753

0.462
  pilG Neisseria meningitidis 44/76-A

45.771

99.259

0.454
  pilC Vibrio cholerae strain A1552

41.728

100

0.417
  pilC Vibrio campbellii strain DS40M4

40.898

99.012

0.405
  pilC Thermus thermophilus HB27

38.155

99.012

0.378

Multiple sequence alignment