Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   KR485_RS19505 Genome accession   NZ_LR027557
Coordinates   4380668..4381993 (+) Length   441 a.a.
NCBI ID   WP_078820091.1    Uniprot ID   -
Organism   Pseudomonas synxantha strain 10586     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4375668..4386993
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KR485_RS19485 - 4375727..4378192 (-) 2466 WP_032878312.1 penicillin-binding protein 1A -
  KR485_RS19490 pilM 4378423..4379079 (+) 657 WP_032881135.1 type IV pilus assembly protein PilM -
  KR485_RS19495 - 4379076..4379630 (+) 555 WP_005784037.1 PilN domain-containing protein -
  KR485_RS19500 - 4379627..4380598 (+) 972 WP_216090627.1 pilus assembly protein PilP -
  KR485_RS19505 pilQ 4380668..4381993 (+) 1326 WP_078820091.1 type IV pilus secretin PilQ family protein Machinery gene
  KR485_RS19510 aroK 4381998..4382516 (+) 519 WP_005784043.1 shikimate kinase AroK -
  KR485_RS19515 aroB 4382642..4383742 (+) 1101 WP_032878306.1 3-dehydroquinate synthase -
  KR485_RS19520 - 4383753..4385318 (+) 1566 WP_216090628.1 AAA family ATPase -

Sequence

Protein


Download         Length: 441 a.a.        Molecular weight: 47868.69 Da        Isoelectric Point: 4.9435

>NTDB_id=1115759 KR485_RS19505 WP_078820091.1 4380668..4381993(+) (pilQ) [Pseudomonas synxantha strain 10586]
MAAAVPNRLDLIHLPPPDSAASVSYTGTRLNLNFQDIDLRAVLQQIADVAGLNLVTSDEVQGSITLRLKDVPWDQALDLV
LQTKGLDKRVKAGVLLVAPADELAARELLALESRKQMAELAPLRRELLQVNYAKAADLAKLFQSVTGFEGATDERGSVAV
DDRTNNIIAYQTGERLEELRRIVAQLDIPVRQVMIEARIVEANVDYDKSLGVRWGGRLSHGRGSVGGISKPVADGAEPPQ
NPPSSPFVDLGSLTGTSGLGVAYITDNLLLDLELTAMEKTGNGEIVSQPKVVTSDKETARILKGTEIPYQESTSQGATSV
SFKEASLSLEVTPQITPDDHVIMAVKVTKDEPDYLNRLNDVPPIKKNEVNAKVLVRDGETIVIGGVFSNTQSKVVDKVPF
LGDVPYLGRLFRRDVLAEKKSELLVFLTPRIMNNQAIAVSR

Nucleotide


Download         Length: 1326 bp        

>NTDB_id=1115759 KR485_RS19505 WP_078820091.1 4380668..4381993(+) (pilQ) [Pseudomonas synxantha strain 10586]
ATGGCTGCTGCTGTGCCCAATCGCCTGGACCTGATCCACCTGCCGCCGCCCGACAGTGCAGCGTCGGTCAGCTATACAGG
CACCCGGCTGAACCTGAATTTCCAGGACATCGACCTGCGGGCGGTCTTGCAGCAAATCGCCGATGTCGCCGGGCTCAACC
TGGTGACCAGTGATGAAGTGCAGGGCTCAATTACCCTGCGGCTCAAGGATGTGCCTTGGGATCAGGCGCTGGATCTGGTG
CTGCAAACCAAAGGTCTGGATAAGCGCGTGAAAGCCGGTGTGTTGCTGGTGGCACCTGCGGATGAGTTGGCCGCTCGCGA
ACTGCTGGCGCTGGAGTCGCGCAAGCAGATGGCGGAACTGGCACCGCTGCGTCGGGAGCTGCTGCAGGTCAACTATGCCA
AGGCGGCGGACCTGGCCAAGCTGTTTCAGTCGGTCACAGGTTTTGAAGGCGCCACGGATGAGCGCGGCTCGGTGGCGGTG
GATGATCGCACCAACAACATCATCGCCTACCAGACCGGCGAACGGCTCGAAGAGCTGCGGCGTATCGTGGCGCAACTGGA
TATTCCCGTCCGCCAAGTGATGATCGAGGCGCGAATTGTCGAGGCCAATGTCGACTACGACAAAAGCCTGGGCGTGCGCT
GGGGTGGGCGGCTCAGTCATGGCAGGGGAAGTGTCGGAGGTATTTCCAAGCCCGTGGCAGACGGCGCCGAACCGCCGCAA
AACCCGCCCAGCTCCCCGTTTGTCGACTTGGGTTCGCTGACCGGCACCTCGGGTCTGGGCGTGGCCTACATCACCGACAA
TCTACTGCTGGACCTTGAGCTGACAGCCATGGAGAAAACCGGCAACGGCGAAATCGTCTCGCAGCCCAAGGTGGTCACGT
CCGACAAGGAGACGGCACGAATCCTCAAGGGCACCGAAATTCCCTATCAAGAGTCCACCTCCCAGGGCGCTACCTCGGTG
TCGTTCAAGGAGGCTTCGCTTTCGCTGGAGGTCACGCCGCAAATCACCCCCGACGACCACGTGATCATGGCGGTCAAGGT
CACCAAGGATGAGCCCGATTACTTGAACAGGCTCAATGATGTACCGCCGATCAAGAAAAACGAGGTCAACGCCAAGGTGC
TGGTCAGGGATGGCGAGACCATCGTCATCGGTGGGGTTTTCTCCAATACCCAAAGCAAAGTGGTAGATAAAGTGCCATTT
TTGGGCGATGTGCCGTATCTTGGCCGCCTTTTCCGGCGCGATGTGCTGGCGGAGAAAAAATCCGAGCTGCTGGTATTCCT
GACTCCGCGTATCATGAATAACCAGGCGATTGCTGTGAGTCGTTGA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(127-192)

Bacterial type II and III secretion system protein (Secretin)

(276-432)

Secretin and TonB N terminus short domain (STN)

(54-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

70.295

100

0.703
  comQ Acinetobacter baylyi ADP1

42.38

100

0.46
  pilQ Acinetobacter baumannii strain A118

39.351

100

0.44
  pilQ Acinetobacter baumannii D1279779

39.351

100

0.44
  pilQ Legionella pneumophila strain Lp02

45.346

95.011

0.431
  pilQ Legionella pneumophila strain ERS1305867

44.869

95.011

0.426
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

43.721

97.506

0.426
  pilQ Vibrio cholerae strain A1552

43.721

97.506

0.426
  pilQ Vibrio campbellii strain DS40M4

44.444

95.918

0.426

Multiple sequence alignment