Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ABBFA_RS16220 Genome accession   NZ_CP001172
Coordinates   3415258..3416484 (+) Length   408 a.a.
NCBI ID   WP_000279217.1    Uniprot ID   -
Organism   Acinetobacter baumannii AB307-0294     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3410258..3421484
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABBFA_RS16185 (ABBFA_03173) rimP 3410923..3411447 (-) 525 WP_000777730.1 ribosome maturation factor RimP -
  ABBFA_RS16205 (ABBFA_03177) secG 3412089..3412418 (-) 330 WP_000555570.1 preprotein translocase subunit SecG -
  ABBFA_RS16210 (ABBFA_03178) tpiA 3412431..3413225 (-) 795 WP_000016940.1 triose-phosphate isomerase -
  ABBFA_RS16215 (ABBFA_03179) pilB 3413516..3415228 (+) 1713 WP_001274994.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABBFA_RS16220 (ABBFA_03180) pilC 3415258..3416484 (+) 1227 WP_000279217.1 type II secretion system F family protein Machinery gene
  ABBFA_RS18115 (ABBFA_03181) pilD 3416484..3417344 (+) 861 WP_001152277.1 A24 family peptidase Machinery gene
  ABBFA_RS16230 (ABBFA_03182) coaE 3417346..3417942 (+) 597 WP_000874125.1 dephospho-CoA kinase -
  ABBFA_RS16235 (ABBFA_03183) - 3417939..3418853 (-) 915 WP_000075018.1 DMT family transporter -
  ABBFA_RS16240 (ABBFA_03184) rlmB 3418889..3419638 (-) 750 WP_001118149.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  ABBFA_RS16245 (ABBFA_03185) - 3419740..3420066 (-) 327 WP_000099685.1 pyrimidine/purine nucleoside phosphorylase -
  ABBFA_RS16250 (ABBFA_03186) - 3420143..3421453 (-) 1311 WP_000753279.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44925.40 Da        Isoelectric Point: 9.9566

>NTDB_id=111461 ABBFA_RS16220 WP_000279217.1 3415258..3416484(+) (pilC) [Acinetobacter baumannii AB307-0294]
MAVKKAQMMPTFAYEGVDRKGVKIKGELPAKNMALAKVTLRKQGVTVRTIREKRKNILEGLFKKKVTTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPAMREVVLGIKGEVEGGSTFASALRKYPQHFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPATVIVVAIVVTIILMVKVVPVFQDLFASFGADLPAFTQMVVNMSKWMQEYWFIMIIAIGAAIA
AFLEAKKRSKKFRDSLDKLALKLPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVIYEKAVMKIREDVA
TGQQLQFAMRVSNRFPSMAIQMVAIGEESGALDSMLDKVATYYENEVDNAVDGLTSMMEPLIMAILGVLVGGLVIAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=111461 ABBFA_RS16220 WP_000279217.1 3415258..3416484(+) (pilC) [Acinetobacter baumannii AB307-0294]
ATGGCTGTCAAAAAGGCACAAATGATGCCGACTTTTGCTTATGAAGGGGTTGACCGTAAGGGCGTAAAAATCAAAGGAGA
ACTTCCGGCTAAAAACATGGCTTTAGCCAAAGTAACCTTACGCAAACAAGGGGTGACTGTTCGAACTATACGTGAAAAAC
GTAAAAATATTCTTGAAGGTTTATTCAAGAAAAAAGTCACCACACTCGATATTACGATTTTTACTCGACAACTGGCGACC
ATGATGAAAGCTGGTGTACCACTCGTACAAGGCTTTGAAATTGTAGCTGAAGGTTTAGAAAACCCGGCCATGCGTGAGGT
TGTACTCGGTATTAAAGGTGAAGTCGAAGGTGGTAGTACTTTTGCCTCAGCTTTAAGAAAATATCCTCAACATTTTGATA
ACTTGTTTTGTTCACTTGTTGAGTCCGGTGAACAATCAGGCGCACTCGAAACGATGCTGGACCGCGTTGCAATTTACAAA
GAAAAAAGTGAGTTGCTCAAGCAAAAAATCAAGAAAGCAATGAAATACCCAGCAACAGTTATTGTAGTAGCCATTGTGGT
GACCATTATTTTGATGGTTAAAGTAGTTCCCGTTTTCCAAGATTTATTTGCGTCTTTTGGAGCAGATTTACCTGCATTTA
CGCAAATGGTTGTGAATATGTCGAAATGGATGCAGGAATACTGGTTCATTATGATTATTGCGATTGGCGCAGCCATTGCT
GCCTTTCTGGAAGCAAAAAAACGCAGTAAAAAGTTTCGTGATAGCTTAGATAAACTGGCGCTTAAGTTACCTATTTTTGG
GGACTTGGTTTATAAAGCAATTATTGCCCGCTATAGCCGCACGCTTGCTACAACATTTGCCGCAGGTGTTCCACTTATTG
ATGCATTAGAATCGACTGCTGGCGCAACCAATAACGTGATTTATGAAAAAGCTGTGATGAAAATTCGTGAAGATGTCGCA
ACGGGTCAACAGCTTCAGTTTGCTATGCGGGTCTCTAATCGTTTTCCATCTATGGCTATACAAATGGTAGCAATTGGTGA
AGAATCGGGTGCACTAGACAGCATGCTCGATAAAGTTGCCACTTATTATGAAAATGAAGTGGATAATGCCGTTGATGGTT
TAACTTCTATGATGGAACCTTTAATTATGGCAATTTTAGGGGTGCTCGTAGGCGGTCTGGTAATTGCTATGTATCTTCCA
ATTTTCCAAATGGGCTCAGTTGTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

99.02

100

0.99
  pilC Acinetobacter baylyi ADP1

86.52

100

0.865
  pilC Pseudomonas stutzeri DSM 10701

60

99.265

0.596
  pilC Legionella pneumophila strain ERS1305867

53.58

99.265

0.532
  pilG Neisseria meningitidis 44/76-A

47.619

97.794

0.466
  pilG Neisseria gonorrhoeae MS11

47.619

97.794

0.466
  pilC Vibrio cholerae strain A1552

42.892

100

0.429
  pilC Vibrio campbellii strain DS40M4

41.089

99.02

0.407
  pilC Thermus thermophilus HB27

36.658

98.284

0.36

Multiple sequence alignment