Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   LHA_RS10095 Genome accession   NZ_LN681225
Coordinates   2284169..2285641 (-) Length   490 a.a.
NCBI ID   WP_231861898.1    Uniprot ID   A0A0A8UQR6
Organism   Legionella hackeliae strain ATCC 35250     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2279169..2290641
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LHA_RS10065 (LHA_2162) - 2279744..2280172 (-) 429 WP_045106426.1 universal stress protein -
  LHA_RS10075 (LHA_2163) pnuC 2280378..2280968 (+) 591 WP_045106428.1 nicotinamide riboside transporter PnuC -
  LHA_RS10080 (LHA_2164) - 2280952..2282466 (-) 1515 WP_045106429.1 AAA family ATPase -
  LHA_RS10085 (LHA_2165) aroB 2282471..2283574 (-) 1104 WP_045106430.1 3-dehydroquinate synthase -
  LHA_RS10090 (LHA_2166) aroK 2283561..2284088 (-) 528 WP_045106431.1 shikimate kinase AroK -
  LHA_RS10095 (LHA_2167) pilQ 2284169..2285641 (-) 1473 WP_231861898.1 type IV pilus secretin PilQ Machinery gene
  LHA_RS10100 (LHA_2168) - 2285644..2286141 (-) 498 WP_082060331.1 pilus assembly protein PilP -
  LHA_RS10105 (LHA_2169) - 2286143..2286742 (-) 600 WP_052673676.1 type 4a pilus biogenesis protein PilO -
  LHA_RS10110 (LHA_2170) - 2286714..2287283 (-) 570 WP_045106433.1 PilN domain-containing protein -
  LHA_RS10115 (LHA_2171) pilM 2287285..2288295 (-) 1011 WP_045106434.1 type IV pilus biogenesis protein PilM -
  LHA_RS10120 (LHA_2173) - 2288558..2289538 (+) 981 WP_045106435.1 hypothetical protein -

Sequence

Protein


Download         Length: 490 a.a.        Molecular weight: 54683.26 Da        Isoelectric Point: 10.3397

>NTDB_id=1113927 LHA_RS10095 WP_231861898.1 2284169..2285641(-) (pilQ) [Legionella hackeliae strain ATCC 35250]
MYKLLLGLCLFFPFSKEIVAHNFSIPQPTKMDVKSEKKDGIIKSKLGDKRISLNFQDIEVRVVLQLLAEFTGKNMVVSDT
VTGNITLSLNDVSWEQALDIILTTQSLEKRRMGKIMFIAPTDELTKREKNIRQAKFETTNLAPLQSMLFRINYAKAADIA
IVLQEKKEAFLSERGRVAVDIRTNSLWVQDHHKQLNIITRLIKQLDIPVRQVLIEARIVNVTKDFAQDLGLRFGVARAGA
LRDHLKSNDGAFKNSNSSNIASLTDRLNFDLTGLPGASSSASVGIALARLSNNILLDLELSALESEGRGEVISSPRLIAT
NQQPALIESGEEIPYQEATSSGATAVAFKKAVLSLKVTPQITPDNRILMDLKINQDIPSPKVFNGVPTILTKEIQTNVLV
DNGRTIVLGGIYKQDKNNEINRIPFLGELPVVGPLFRNQSVSTRNEELLIFITPRIISNNLSPKSFDSQRQRAVRDVKLK
KFGRQLEKRH

Nucleotide


Download         Length: 1473 bp        

>NTDB_id=1113927 LHA_RS10095 WP_231861898.1 2284169..2285641(-) (pilQ) [Legionella hackeliae strain ATCC 35250]
TTGTATAAATTACTTCTAGGCTTATGCCTGTTCTTTCCTTTTAGCAAAGAGATAGTGGCTCATAATTTTTCAATACCACA
ACCAACCAAAATGGATGTAAAAAGCGAAAAGAAAGATGGAATTATTAAAAGTAAATTAGGTGATAAGCGAATTTCCTTAA
ATTTTCAAGATATCGAAGTGAGAGTTGTTTTACAATTATTAGCTGAATTTACTGGAAAAAATATGGTTGTCAGTGATACA
GTAACGGGGAATATTACGCTGAGTTTGAATGATGTATCCTGGGAACAGGCTTTGGATATTATTTTAACAACCCAATCCTT
AGAGAAACGACGAATGGGAAAGATCATGTTTATCGCACCTACTGACGAGCTGACTAAACGTGAGAAAAATATACGGCAGG
CAAAATTTGAAACAACCAATTTAGCTCCCCTACAGTCAATGTTATTTCGAATTAATTATGCAAAAGCTGCTGACATTGCT
ATTGTATTACAAGAAAAAAAAGAAGCTTTTTTATCAGAACGAGGTAGAGTGGCTGTTGACATTCGAACCAATAGTTTATG
GGTTCAAGATCACCATAAGCAACTAAACATTATCACAAGGCTCATCAAACAACTTGATATCCCAGTCAGACAAGTGTTGA
TTGAGGCGCGTATTGTTAATGTTACTAAAGATTTTGCTCAAGATTTAGGATTGCGTTTTGGCGTTGCTCGAGCGGGAGCT
TTGCGTGATCATTTAAAATCAAACGACGGCGCGTTCAAAAACTCAAACTCTTCGAACATTGCGTCGCTAACAGATAGGTT
AAATTTTGATCTAACCGGGTTGCCAGGGGCAAGTTCATCTGCTTCTGTTGGTATAGCCTTGGCGAGGCTCAGTAATAATA
TTTTATTGGATTTGGAATTGTCGGCTCTTGAAAGTGAGGGGCGTGGGGAAGTAATATCTAGCCCAAGACTGATAGCGACT
AATCAACAGCCTGCGTTGATTGAGTCAGGAGAAGAAATTCCTTATCAAGAGGCCACATCGAGTGGAGCAACTGCTGTGGC
ATTTAAAAAAGCGGTGCTCAGTTTAAAAGTTACTCCGCAGATAACTCCTGATAACAGAATTTTAATGGATTTAAAAATTA
ATCAGGATATACCATCACCAAAAGTTTTTAATGGTGTGCCAACGATTTTGACAAAAGAAATCCAAACCAATGTTTTGGTA
GATAATGGTCGAACAATTGTCCTGGGTGGGATTTATAAACAAGATAAAAATAATGAGATTAATCGCATCCCTTTTTTAGG
TGAATTACCGGTTGTAGGTCCATTATTTAGAAATCAATCTGTCTCAACTAGAAATGAGGAGTTGCTCATTTTCATTACTC
CTAGGATAATATCAAACAATTTATCGCCAAAATCCTTTGATAGCCAAAGGCAGCGTGCTGTAAGAGATGTAAAATTAAAA
AAATTTGGTAGGCAGTTGGAAAAAAGGCATTAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(148-211)

Bacterial type II and III secretion system protein (Secretin)

(302-457)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A8UQR6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Legionella pneumophila strain ERS1305867

65.06

84.694

0.551
  pilQ Legionella pneumophila strain Lp02

65.06

84.694

0.551
  pilQ Vibrio cholerae strain A1552

47.143

85.714

0.404
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

47.143

85.714

0.404
  pilQ Pseudomonas aeruginosa PAK

43.237

92.041

0.398
  comQ Acinetobacter baylyi ADP1

42.953

91.224

0.392
  pilQ Vibrio campbellii strain DS40M4

44.575

86.531

0.386
  pilQ Acinetobacter baumannii strain A118

40.343

95.102

0.384
  pilQ Acinetobacter baumannii D1279779

40.343

95.102

0.384

Multiple sequence alignment