Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR   Type   Regulator
Locus tag   A3I7_RS0103670 Genome accession   NZ_KB904458
Coordinates   11893..12798 (-) Length   301 a.a.
NCBI ID   WP_018375431.1    Uniprot ID   -
Organism   Streptococcus orisratti DSM 15617     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 6893..17798
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A3I7_RS0103645 - 7526..9313 (-) 1788 WP_018375426.1 acyltransferase family protein -
  A3I7_RS0103650 - 9310..9690 (-) 381 WP_018375427.1 membrane protein -
  A3I7_RS0103655 - 9708..10136 (-) 429 WP_018375428.1 low molecular weight protein-tyrosine-phosphatase -
  A3I7_RS0103660 ruvB 10427..11428 (-) 1002 WP_026217115.1 Holliday junction branch migration DNA helicase RuvB -
  - comS 11715..11813 (-) 99 - - Regulator
  A3I7_RS0103670 comR 11893..12798 (-) 906 WP_018375431.1 helix-turn-helix domain-containing protein Regulator
  A3I7_RS14000 - 12875..13042 (-) 168 Protein_11 XRE family transcriptional regulator -
  A3I7_RS0103680 comR 13078..13989 (-) 912 WP_018375433.1 helix-turn-helix domain-containing protein Regulator
  A3I7_RS0103685 purB 14206..15504 (-) 1299 WP_018375434.1 adenylosuccinate lyase -
  A3I7_RS0103690 - 15515..17266 (-) 1752 WP_018375435.1 RNA-directed DNA polymerase -

Sequence

Protein


Download         Length: 301 a.a.        Molecular weight: 35288.68 Da        Isoelectric Point: 4.6185

>NTDB_id=1113405 A3I7_RS0103670 WP_018375431.1 11893..12798(-) (comR) [Streptococcus orisratti DSM 15617]
MINQFGEKVRYLREQREIPREEFCGDETELSVRQLARIETGSLPNLSKAQFIASRLGVQLGELTDEKSLEPPKRYKELKY
LILRTPLYAEPERIKTREEQLDEVSEVFYDTLPEYEQLVIDCLQAKLDIHMSNNISFGLGIIDDYFEQITKKNNYSLNDL
VVIDIYFMSIISEIKKGESASLKDFNKLVNNLIEQRDNFNIETLFVLNNLLIHACGVYLEIANIEKIEMLIKICERIMSK
IQDFQKSPILNMIEWKLSLQLLKDKKRAEACYSKALLFSNIMEDEYLETKLQEEWQKDCAT

Nucleotide


Download         Length: 906 bp        

>NTDB_id=1113405 A3I7_RS0103670 WP_018375431.1 11893..12798(-) (comR) [Streptococcus orisratti DSM 15617]
ATGATAAACCAATTTGGAGAAAAAGTTAGGTATCTAAGAGAGCAAAGAGAAATTCCGCGAGAAGAATTTTGCGGAGATGA
AACCGAACTCTCAGTTAGACAATTAGCCAGAATTGAGACGGGTTCCCTACCTAATTTATCAAAAGCACAGTTCATTGCAA
GTCGATTAGGAGTTCAACTTGGAGAGTTGACAGATGAAAAAAGTTTAGAGCCTCCAAAGCGATATAAAGAACTAAAGTAT
CTGATTTTGAGGACTCCTTTGTACGCGGAACCTGAAAGAATTAAAACACGTGAGGAACAACTTGATGAAGTTTCAGAAGT
ATTTTATGACACTCTCCCAGAGTATGAGCAATTGGTTATTGATTGTCTGCAAGCAAAGCTTGATATACATATGAGTAATA
ATATTTCCTTTGGTTTAGGTATTATAGACGATTATTTTGAACAAATAACTAAAAAAAATAATTATAGTTTAAATGATTTA
GTTGTTATAGACATTTATTTTATGAGCATTATATCGGAAATTAAAAAAGGGGAGTCTGCTAGTCTTAAAGACTTCAATAA
ACTTGTTAATAATTTAATTGAACAGAGAGACAACTTCAATATAGAAACATTATTTGTTTTAAATAATTTACTTATACATG
CTTGTGGGGTCTATCTGGAAATTGCTAATATTGAAAAAATTGAGATGCTTATAAAAATTTGTGAGCGTATCATGTCTAAG
ATTCAAGACTTTCAAAAATCTCCTATTTTGAATATGATTGAATGGAAACTAAGTTTACAACTATTAAAAGATAAGAAACG
AGCAGAAGCTTGTTATAGCAAAGCGTTGCTTTTTTCTAATATAATGGAAGATGAATATTTAGAGACAAAATTACAAGAAG
AATGGCAAAAAGATTGTGCAACATGA

Domains

Predicted by InterproScan.

ComR tetratricopeptide (ComR_TPR)

(72-295)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR Streptococcus infantarius subsp. infantarius ATCC BAA-102

51.042

95.681

0.488
  comR Streptococcus mutans UA159

46.333

99.668

0.462
  comR Streptococcus pyogenes MGAS8232

46.026

100

0.462
  comR Streptococcus pyogenes MGAS315

43.478

99.336

0.432
  comR Streptococcus suis P1/7

39.731

98.671

0.392
  comR Streptococcus suis 05ZYH33

39.731

98.671

0.392
  comR Streptococcus suis D9

36.667

99.668

0.365

Multiple sequence alignment