Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYA   Type   Machinery gene
Locus tag   HMPREF9318_RS08410 Genome accession   NZ_KB373319
Coordinates   113122..113553 (+) Length   143 a.a.
NCBI ID   WP_006740712.1    Uniprot ID   -
Organism   Streptococcus urinalis FB127-CNA-2     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 108122..118553
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HMPREF9318_RS08400 (HMPREF9318_01682) rpoC 108952..112587 (+) 3636 WP_006739350.1 DNA-directed RNA polymerase subunit beta' -
  HMPREF9318_RS08405 (HMPREF9318_01683) - 112696..113058 (+) 363 WP_006739030.1 DUF1033 family protein -
  HMPREF9318_RS08410 (HMPREF9318_01684) comYA 113122..113553 (+) 432 WP_006740712.1 ATPase, T2SS/T4P/T4SS family Machinery gene
  HMPREF9318_RS08415 (HMPREF9318_01685) - 114003..114545 (-) 543 WP_006738598.1 DUF6036 family nucleotidyltransferase -
  HMPREF9318_RS08420 (HMPREF9318_01686) - 114538..114825 (-) 288 WP_006740130.1 hypothetical protein -
  HMPREF9318_RS08425 (HMPREF9318_01687) - 114809..115033 (-) 225 WP_006739806.1 hypothetical protein -
  HMPREF9318_RS08430 (HMPREF9318_01688) - 115037..115468 (-) 432 WP_006739697.1 hypothetical protein -
  HMPREF9318_RS08435 (HMPREF9318_01689) - 115458..116375 (-) 918 WP_006740166.1 IS1595 family transposase -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16742.36 Da        Isoelectric Point: 9.2750

>NTDB_id=1113390 HMPREF9318_RS08410 WP_006740712.1 113122..113553(+) (comYA) [Streptococcus urinalis FB127-CNA-2]
MVQNLAKEIIFEAIRLDAQDIYMIPKDNNYNLLMRINDERRLVSVHQCDSMASIISHFKFVSGMNIGEKRRIQIGSCDYF
YGEEKVSLRLSSVGDYQNRESLVIRLLHKKDKDLYYWFDNRNRLLTAIKSRGLYLFSGPVGVL

Nucleotide


Download         Length: 432 bp        

>NTDB_id=1113390 HMPREF9318_RS08410 WP_006740712.1 113122..113553(+) (comYA) [Streptococcus urinalis FB127-CNA-2]
GTGGTTCAAAATTTAGCAAAGGAAATCATATTTGAAGCAATAAGATTAGATGCACAAGATATTTATATGATTCCTAAAGA
TAATAACTATAATTTACTAATGCGAATTAATGATGAGAGGAGACTTGTTAGTGTTCATCAGTGTGATAGCATGGCTAGTA
TTATTAGTCACTTTAAATTTGTCTCAGGAATGAATATTGGAGAAAAACGACGTATCCAAATTGGTTCATGTGACTATTTT
TATGGAGAAGAAAAGGTTTCACTAAGACTTTCTAGTGTTGGCGATTATCAAAATAGAGAAAGTCTTGTTATCCGATTACT
ACATAAAAAAGATAAAGATTTATATTATTGGTTTGATAATAGAAATCGACTGTTAACAGCGATTAAAAGTAGAGGGTTAT
ATTTATTTTCAGGACCAGTTGGAGTATTATGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(8-139)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYA Streptococcus mutans UA159

61.972

99.301

0.615
  comYA Streptococcus mutans UA140

61.972

99.301

0.615
  comYA Streptococcus gordonii str. Challis substr. CH1

56.028

98.601

0.552
  comGA/cglA/cilD Streptococcus mitis NCTC 12261

55.319

98.601

0.545
  comGA/cglA/cilD Streptococcus pneumoniae Rx1

54.61

98.601

0.538
  comGA/cglA/cilD Streptococcus pneumoniae D39

54.61

98.601

0.538
  comGA/cglA/cilD Streptococcus pneumoniae R6

54.61

98.601

0.538
  comGA/cglA/cilD Streptococcus pneumoniae TIGR4

54.61

98.601

0.538
  comGA/cglA Streptococcus sobrinus strain NIDR 6715-7

53.901

98.601

0.531
  comGA Lactococcus lactis subsp. cremoris KW2

45.07

99.301

0.448

Multiple sequence alignment