Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | V4T04_RS02080 | Genome accession | NZ_JAZICS010000001 |
| Coordinates | 418067..418357 (-) | Length | 96 a.a. |
| NCBI ID | WP_349651626.1 | Uniprot ID | - |
| Organism | Lactococcus lactis subsp. lactis strain DGCC12653 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 413067..423357
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| V4T04_RS02040 | - | 413978..414367 (-) | 390 | WP_139917180.1 | DUF722 domain-containing protein | - |
| V4T04_RS02045 | - | 414484..414753 (+) | 270 | WP_161935088.1 | DUF3892 domain-containing protein | - |
| V4T04_RS02050 | - | 414874..415029 (+) | 156 | WP_014572174.1 | hypothetical protein | - |
| V4T04_RS02055 | - | 415249..415635 (+) | 387 | WP_195229125.1 | DUF805 domain-containing protein | - |
| V4T04_RS02060 | - | 415833..416501 (+) | 669 | WP_139917187.1 | type 1 glutamine amidotransferase | - |
| V4T04_RS02065 | - | 416603..416824 (-) | 222 | WP_139917189.1 | hypothetical protein | - |
| V4T04_RS02070 | - | 416805..417608 (-) | 804 | WP_139917191.1 | helix-turn-helix domain-containing protein | - |
| V4T04_RS02075 | - | 417608..417934 (-) | 327 | WP_349651625.1 | endonuclease | - |
| V4T04_RS02080 | ssb | 418067..418357 (-) | 291 | WP_349651626.1 | single-stranded DNA-binding protein | Machinery gene |
Sequence
Protein
Download Length: 96 a.a. Molecular weight: 10615.65 Da Isoelectric Point: 4.3297
>NTDB_id=1113269 V4T04_RS02080 WP_349651626.1 418067..418357(-) (ssb) [Lactococcus lactis subsp. lactis strain DGCC12653]
ADFINCVIWGKSAENLANWTHKGQLIGVTGSIQTRNYENQQGQRVYIMEVVASNFQVLEKSNQANGERVGNPAAKPQNND
SFGSDPMEISDDDLPF
ADFINCVIWGKSAENLANWTHKGQLIGVTGSIQTRNYENQQGQRVYIMEVVASNFQVLEKSNQANGERVGNPAAKPQNND
SFGSDPMEISDDDLPF
Nucleotide
Download Length: 291 bp
>NTDB_id=1113269 V4T04_RS02080 WP_349651626.1 418067..418357(-) (ssb) [Lactococcus lactis subsp. lactis strain DGCC12653]
GCTGACTTTATCAATTGTGTTATTTGGGGTAAATCAGCCGAAAACTTGGCCAATTGGACTCATAAAGGTCAATTAATTGG
AGTTACTGGTAGTATTCAAACTCGCAACTATGAGAATCAACAAGGGCAACGAGTTTATATTATGGAGGTTGTCGCAAGTA
ATTTCCAAGTACTTGAAAAAAGTAATCAAGCAAATGGTGAACGAGTTGGTAATCCAGCTGCAAAACCACAAAATAATGAT
TCTTTTGGAAGTGATCCAATGGAAATTTCAGATGATGACCTACCATTTTAA
GCTGACTTTATCAATTGTGTTATTTGGGGTAAATCAGCCGAAAACTTGGCCAATTGGACTCATAAAGGTCAATTAATTGG
AGTTACTGGTAGTATTCAAACTCGCAACTATGAGAATCAACAAGGGCAACGAGTTTATATTATGGAGGTTGTCGCAAGTA
ATTTCCAAGTACTTGAAAAAAGTAATCAAGCAAATGGTGAACGAGTTGGTAATCCAGCTGCAAAACCACAAAATAATGAT
TCTTTTGGAAGTGATCCAATGGAAATTTCAGATGATGACCTACCATTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
51.2 |
100 |
0.667 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
44.882 |
100 |
0.594 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
38.542 |
100 |
0.385 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
37.5 |
100 |
0.375 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
37.5 |
100 |
0.375 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
37.5 |
100 |
0.375 |
| ssbB/cilA | Streptococcus mitis SK321 |
37.5 |
100 |
0.375 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
37.5 |
100 |
0.375 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
37.5 |
100 |
0.375 |