Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   IEC97_RS14255 Genome accession   NZ_JAEHGC010000005
Coordinates   234835..236085 (+) Length   416 a.a.
NCBI ID   WP_198311247.1    Uniprot ID   -
Organism   Neobacillus cucumis strain T4S4     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 229835..241085
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IEC97_RS14230 (IEC97_14230) - 231197..231919 (+) 723 WP_198311243.1 SDR family oxidoreductase -
  IEC97_RS14235 (IEC97_14235) - 231997..232254 (+) 258 WP_026574914.1 DUF3243 domain-containing protein -
  IEC97_RS14240 (IEC97_14240) - 232426..233217 (+) 792 WP_198311244.1 DUF3388 domain-containing protein -
  IEC97_RS14245 (IEC97_14245) - 233238..234143 (+) 906 WP_198311245.1 helix-turn-helix domain-containing protein -
  IEC97_RS14250 (IEC97_14250) pgsA 234240..234818 (+) 579 WP_198311246.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  IEC97_RS14255 (IEC97_14255) cinA 234835..236085 (+) 1251 WP_198311247.1 competence/damage-inducible protein A Machinery gene
  IEC97_RS14260 (IEC97_14260) - 236685..236876 (+) 192 Protein_240 DNA recombination/repair protein RecA -
  IEC97_RS14265 (IEC97_14265) - 237236..237652 (+) 417 Protein_241 DNA recombination/repair protein RecA -
  IEC97_RS14270 (IEC97_14270) - 237826..238350 (+) 525 WP_232490104.1 endonuclease domain-containing protein -
  IEC97_RS14275 (IEC97_14275) - 238615..239046 (+) 432 Protein_243 DNA recombination/repair protein RecA -
  IEC97_RS14280 (IEC97_14280) rny 239364..240923 (+) 1560 WP_026574920.1 ribonuclease Y -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45013.46 Da        Isoelectric Point: 5.1970

>NTDB_id=1112743 IEC97_RS14255 WP_198311247.1 234835..236085(+) (cinA) [Neobacillus cucumis strain T4S4]
MNAEIIAVGSELLLGQIVNTNARFISQHLAGAGINVYYHTVVGDNPDRLKSAIEIAEDRSDLIIFTGGLGPTKDDLTKET
IAKHIGKELVFDENALESIEAYFKKTNRQMTENNRKQALVLEGSHVLANDHGMAPGMVVESKGHVYMLLPGPPKEMEPMF
IEYGLTALSLQVKSNDKIVSRVLRFFGIGEAALETEIIDLIDSQSNPTIAPLAGDGEVTLRLTAKHQDHDMAIKMLDEIE
QKISARVGQFLYGYNNTSLVEELSKVLKAKNVTIGAAESLTGGMFQQELTSVPGASSILKGGVVCYTNEVKHQVLKVKQE
TIDTYGVVSEQCALELAENVSSLVGADIGISFTGVAGPDEQEGKPVGTVYIGLSIKGQPGVVEKVILAGSREANRTRAVK
FGCYYLLKHLKESQNA

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=1112743 IEC97_RS14255 WP_198311247.1 234835..236085(+) (cinA) [Neobacillus cucumis strain T4S4]
GTGAACGCAGAAATTATCGCAGTTGGCTCAGAGTTACTTCTTGGGCAAATTGTCAATACAAATGCACGGTTTATCTCTCA
GCATTTAGCAGGTGCAGGCATTAATGTCTATTATCATACCGTAGTTGGAGATAACCCTGATCGTTTAAAATCAGCTATCG
AGATTGCCGAAGACCGATCTGATTTGATTATTTTTACAGGCGGTCTGGGGCCAACGAAAGATGATTTGACGAAAGAAACG
ATTGCAAAGCATATCGGTAAGGAATTGGTTTTTGACGAAAATGCCTTGGAGTCAATTGAGGCTTATTTTAAGAAAACAAA
TCGTCAGATGACGGAAAATAATCGGAAACAAGCACTTGTATTAGAAGGCTCTCACGTTTTGGCCAATGATCACGGGATGG
CACCGGGAATGGTGGTTGAGAGTAAGGGGCATGTTTATATGCTATTGCCTGGACCGCCGAAGGAAATGGAACCGATGTTC
ATTGAATACGGTCTTACGGCATTGTCATTGCAAGTGAAGAGTAATGATAAAATTGTATCCAGAGTGCTACGCTTTTTCGG
GATTGGCGAAGCCGCATTGGAAACTGAAATTATCGATCTCATTGATTCACAGAGTAATCCTACGATTGCCCCATTAGCTG
GAGATGGCGAGGTAACCTTAAGATTAACGGCGAAGCATCAGGACCATGATATGGCTATTAAAATGCTCGATGAGATTGAG
CAAAAGATTAGTGCCCGAGTCGGACAATTTTTATATGGCTATAACAATACATCGCTAGTTGAAGAGTTAAGTAAAGTTTT
AAAAGCGAAGAATGTAACCATTGGGGCTGCCGAAAGCCTGACAGGCGGAATGTTTCAGCAGGAGTTAACCTCCGTCCCCG
GTGCAAGTTCGATTTTAAAAGGCGGCGTTGTTTGCTATACAAATGAAGTGAAACACCAGGTGTTAAAAGTGAAGCAGGAA
ACTATTGATACGTACGGAGTTGTAAGTGAGCAGTGTGCGTTGGAGTTAGCTGAAAATGTTTCAAGTCTTGTAGGTGCGGA
TATTGGCATCAGTTTTACAGGAGTTGCCGGACCGGATGAACAGGAAGGAAAGCCGGTTGGTACGGTTTATATTGGACTTT
CTATTAAGGGACAACCGGGTGTTGTGGAAAAAGTAATCCTTGCCGGTTCAAGGGAAGCGAACCGGACCCGTGCGGTGAAA
TTTGGTTGCTATTATTTGCTTAAACATTTAAAAGAATCACAGAATGCTTAG

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(257-409)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-164)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

61.707

98.558

0.608
  cinA Streptococcus mitis SK321

47.794

98.077

0.469
  cinA Streptococcus pneumoniae TIGR4

48.139

96.875

0.466
  cinA Streptococcus pneumoniae R6

47.643

96.875

0.462
  cinA Streptococcus mitis NCTC 12261

47.643

96.875

0.462
  cinA Streptococcus mutans UA159

47.643

96.875

0.462
  cinA Streptococcus pneumoniae Rx1

47.643

96.875

0.462
  cinA Streptococcus pneumoniae D39

47.395

96.875

0.459
  cinA Streptococcus suis isolate S10

41.005

90.865

0.373

Multiple sequence alignment