Detailed information NTG1112685

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: KHN80_RS15095
• Genome accession: NZ_HG999365
• Coordinates: 3475164..3476294 (-)
• Length: 376 a.a.
• NCBI ID: WP_016902355.1
• Uniprot ID: -
• Organism: Xanthomonas arboricola pv. juglandis isolate Xanthomonas arboricola pv. juglandis CPBF 765 isolated from C. illinoinensis
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3470164..3481294

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KHN80_RS15065 (XCY_003010)	-	3470507..3470947 (-)	441	WP_016902361.1	OsmC family protein	-
KHN80_RS15070 (XCY_003011)	-	3471200..3472147 (-)	948	WP_039526216.1	aspartate carbamoyltransferase catalytic subunit	-
KHN80_RS15075 (XCY_003012)	ruvX	3472163..3472630 (-)	468	WP_024939388.1	Holliday junction resolvase RuvX	-
KHN80_RS15080 (XCY_003013)	-	3472623..3473189 (-)	567	WP_011051924.1	YqgE/AlgH family protein	-
KHN80_RS15085 (XCY_003014)	-	3473525..3474070 (+)	546	WP_104594471.1	DNA-3-methyladenine glycosylase I	-
KHN80_RS15090 (XCY_003015)	-	3474208..3474882 (-)	675	WP_024940756.1	YitT family protein	-
KHN80_RS15095 (XCY_003016)	pilU	3475164..3476294 (-)	1131	WP_016902355.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
KHN80_RS15100 (XCY_003017)	pilT	3476417..3477454 (-)	1038	WP_003489919.1	type IV pilus twitching motility protein PilT	Machinery gene
KHN80_RS15105 (XCY_003018)	-	3477777..3478469 (+)	693	WP_211914097.1	YggS family pyridoxal phosphate-dependent enzyme	-
KHN80_RS15110 (XCY_003019)	proC	3478531..3479376 (+)	846	WP_211914098.1	pyrroline-5-carboxylate reductase	-
KHN80_RS15115 (XCY_003020)	-	3479978..3480403 (+)	426	WP_026064288.1	HU family DNA-binding protein	-
KHN80_RS15120 (XCY_003021)	-	3480540..3481160 (+)	621	WP_211914099.1	M23 family metallopeptidase	-

Sequence

Protein

• Length: 376 a.a.
• Molecular weight: 41966.24 Da
• Isoelectric Point: 6.8287

>NTDB_id=1112685 KHN80_RS15095 WP_016902355.1 3475164..3476294(-) (pilU) [Xanthomonas arboricola pv. juglandis isolate Xanthomonas arboricola pv. juglandis CPBF 765 isolated from C. illinoinensis]
MSTIDFTSFLKLMAHQKASDLFITSGMPPAIKVHGKISPITQTPLTAQQSRDLVLNVMTPSQREEFEKTHECNFAIGVSG
VGRFRVSCFYQRNQVGMVLRRIETRIPTVEELSLPPVIKTLAMTKRGIIIFVGATGTGKSTSLAAMIGYRNQNSTGHIIT
IEDPIEFVHKHEGCIITQREVGIDTDSWENALKNTLRQAPDVIMIGEVRTREGMDHAVAFAETGHLVLCTLHANNANQAM
DRIINFFPEDRRNQLLMDLSLNLKGVVAQQLIPTPDGRGRRVAMEIMLGTPLVQDYIRDGEIHKLKEIMKESTNLGMRTF
DQSLFELYQAGEISYEDALRYADSQNEVRLRIKLSQGGDAKTLAQGLDGVEIAEVR

Nucleotide

• Length: 1131 bp

>NTDB_id=1112685 KHN80_RS15095 WP_016902355.1 3475164..3476294(-) (pilU) [Xanthomonas arboricola pv. juglandis isolate Xanthomonas arboricola pv. juglandis CPBF 765 isolated from C. illinoinensis]
ATGAGCACCATCGACTTCACCTCCTTCCTCAAGCTGATGGCGCACCAGAAGGCGTCGGATCTGTTCATCACCTCGGGGAT
GCCGCCGGCGATCAAGGTGCACGGCAAGATCAGTCCGATCACCCAGACCCCGCTGACCGCGCAACAGAGTCGCGATCTGG
TGTTGAACGTGATGACGCCGTCGCAGCGCGAAGAATTCGAAAAGACCCACGAGTGCAATTTCGCCATCGGCGTGTCCGGG
GTCGGGCGCTTTCGCGTGAGCTGCTTCTACCAGCGCAACCAGGTTGGCATGGTGCTGCGCCGGATCGAAACGCGCATCCC
CACGGTGGAAGAGTTGAGCCTGCCGCCGGTGATCAAGACGCTGGCGATGACCAAGCGCGGCATCATCATCTTCGTCGGCG
CCACCGGCACCGGCAAGTCCACCTCGCTGGCGGCGATGATCGGTTACCGCAACCAGAATTCCACCGGGCACATCATCACC
ATCGAAGACCCGATCGAATTCGTGCACAAGCACGAGGGCTGCATCATCACCCAGCGCGAAGTCGGCATCGATACCGACAG
CTGGGAAAACGCGCTGAAAAACACCCTGCGCCAGGCGCCGGACGTGATCATGATTGGCGAGGTGCGCACCCGCGAAGGCA
TGGATCATGCCGTGGCCTTCGCCGAAACCGGCCATCTGGTGCTGTGTACCCTGCACGCCAACAACGCCAACCAGGCGATG
GACCGCATCATCAACTTCTTCCCGGAAGACCGGCGCAACCAGCTGTTGATGGACCTGTCGCTCAATCTCAAGGGCGTGGT
CGCGCAGCAGTTGATTCCGACCCCGGATGGCCGCGGCCGGCGCGTGGCGATGGAGATCATGCTGGGCACACCGCTGGTGC
AGGACTACATCCGCGACGGCGAGATCCACAAGCTCAAGGAGATCATGAAGGAGTCCACCAACCTGGGCATGCGCACCTTC
GACCAGAGCCTGTTCGAGCTGTACCAGGCTGGCGAGATCAGCTACGAGGACGCGCTGCGCTACGCCGACTCGCAGAACGA
GGTGCGCCTGCGCATCAAGCTGTCGCAGGGCGGCGACGCCAAGACCCTGGCGCAGGGCCTGGATGGCGTGGAGATCGCCG
AGGTTCGCTGA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (117-272)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Pseudomonas stutzeri DSM 10701	67.575	97.606	0.66
pilU	Acinetobacter baylyi ADP1	63.866	94.947	0.606
pilU	Vibrio cholerae strain A1552	53.652	94.681	0.508
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	42.297	94.947	0.402
pilT	Acinetobacter baumannii strain A118	40.407	91.489	0.37
pilT	Acinetobacter nosocomialis M2	40.407	91.489	0.37
pilT	Acinetobacter baumannii D1279779	40.407	91.489	0.37
pilT	Pseudomonas aeruginosa PAK	41.194	89.096	0.367