Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   KHO06_RS03850 Genome accession   NZ_HG992751
Coordinates   824979..826202 (-) Length   407 a.a.
NCBI ID   WP_012128878.1    Uniprot ID   -
Organism   Vibrio sp. B1FIG11 isolate LMG10946-nano     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 819979..831202
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHO06_RS03815 (ACOMICROBIO_LMKGKHOH_01398) smrA 820804..821385 (-) 582 WP_038891618.1 DNA endonuclease SmrA -
  KHO06_RS03820 (ACOMICROBIO_LMKGKHOH_01399) - 821519..821659 (-) 141 WP_010650907.1 DUF3149 domain-containing protein -
  KHO06_RS03830 (ACOMICROBIO_LMKGKHOH_01401) yacG 822397..822597 (-) 201 WP_012128882.1 DNA gyrase inhibitor YacG -
  KHO06_RS03835 (ACOMICROBIO_LOCUS577) zapD 822654..823394 (-) 741 WP_012128881.1 cell division protein ZapD -
  KHO06_RS03840 (ACOMICROBIO_LOCUS578) coaE 823422..824036 (-) 615 WP_045451194.1 dephospho-CoA kinase -
  KHO06_RS03845 (ACOMICROBIO_LOCUS579) pilD 824037..824906 (-) 870 WP_012128879.1 A24 family peptidase Machinery gene
  KHO06_RS03850 (ACOMICROBIO_LOCUS580) pilC 824979..826202 (-) 1224 WP_012128878.1 type II secretion system F family protein Machinery gene
  KHO06_RS03855 (ACOMICROBIO_LOCUS581) pilB 826237..827922 (-) 1686 WP_038891992.1 type IV-A pilus assembly ATPase PilB Machinery gene
  KHO06_RS03860 (ACOMICROBIO_LOCUS582) - 827930..828355 (-) 426 WP_212582119.1 pilin -
  KHO06_RS03865 (ACOMICROBIO_LOCUS583) nadC 828621..829508 (-) 888 WP_212582120.1 carboxylating nicotinate-nucleotide diphosphorylase -
  KHO06_RS03870 (ACOMICROBIO_LOCUS584) ampD 829601..830152 (+) 552 WP_038891990.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 44957.21 Da        Isoelectric Point: 10.3971

>NTDB_id=1112471 KHO06_RS03850 WP_012128878.1 824979..826202(-) (pilC) [Vibrio sp. B1FIG11 isolate LMG10946-nano]
MKTIAPQLKNYRWKGINSSGKKTSGNVLAMTEIEVRERLDAQHIKIKKLKKGSISFITKISHRVKGKDITIFTRQIATML
MTGVPIVQALKLVSENHKKAEMKSILMSVTRAVEAGTPMSKAMRTASTHFDPLYTDLIATGEQSGNLSQVFERLATYREK
SEQLRAKVIKALIYPAMVVLVALGVSYLMLTRVIPEFEKMFTGFGADLPAFTQMVLNLSAWTQNWGPFIGLSFVSLLISG
KIMSQRSDSFRLLAARSSLRVPILGPVLSKAAIAKFSRTLATSFSAGIPILTALKTTSKTSGNMHYQLAIEEVYRDTAAG
MPMYIAMRNCNVFPELVLQMVMIGEESGRLDDMLNKIAAIYEFEVDNTVDNLSKILEPLIIVFLGVVVGGLVTAMYLPIF
NLMSVLG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=1112471 KHO06_RS03850 WP_012128878.1 824979..826202(-) (pilC) [Vibrio sp. B1FIG11 isolate LMG10946-nano]
ATGAAAACCATCGCTCCTCAACTCAAGAACTACCGTTGGAAAGGCATTAATAGCTCGGGTAAAAAAACCTCTGGAAACGT
GCTCGCAATGACCGAAATCGAGGTAAGAGAGCGCCTCGATGCTCAACACATCAAGATAAAGAAACTGAAGAAAGGCAGCA
TTTCTTTTATCACCAAGATCAGTCATCGCGTCAAAGGCAAAGACATCACGATATTTACTCGCCAAATTGCCACCATGCTA
ATGACGGGCGTACCGATTGTTCAGGCACTTAAGTTGGTTTCAGAGAACCACAAAAAAGCCGAGATGAAATCGATTCTGAT
GAGTGTCACACGAGCGGTAGAGGCAGGGACACCGATGTCGAAAGCCATGCGCACTGCCAGTACACATTTTGATCCGCTTT
ATACAGACCTAATCGCGACTGGTGAACAGTCCGGAAACCTATCTCAAGTCTTTGAGCGTTTGGCAACTTATCGAGAAAAG
AGCGAGCAGTTGCGCGCAAAAGTGATTAAAGCGCTCATTTACCCAGCGATGGTGGTTTTAGTAGCGCTTGGGGTTTCCTA
TTTAATGCTGACTAGAGTTATCCCTGAGTTTGAAAAGATGTTTACAGGTTTTGGAGCCGACTTACCCGCCTTTACTCAGA
TGGTACTCAACCTCTCTGCTTGGACCCAAAACTGGGGCCCTTTTATTGGACTGAGTTTTGTGAGCCTGCTTATTTCCGGC
AAAATTATGTCGCAGCGATCCGATTCATTTCGCCTTTTAGCTGCGCGCTCGAGTTTAAGAGTCCCTATCTTGGGGCCAGT
ATTATCCAAAGCCGCCATTGCCAAGTTTAGCCGTACTTTAGCAACCAGCTTTAGTGCGGGTATTCCAATTCTCACCGCAT
TAAAAACCACCTCAAAAACCTCCGGTAACATGCACTATCAATTAGCAATTGAAGAAGTGTATCGAGACACTGCAGCTGGT
ATGCCGATGTATATTGCCATGCGTAACTGTAACGTTTTCCCTGAGCTAGTACTGCAAATGGTCATGATAGGTGAAGAGTC
AGGTCGATTGGATGATATGCTCAACAAGATAGCCGCTATTTATGAGTTTGAAGTGGATAATACCGTTGATAATCTGAGTA
AGATTTTAGAACCATTGATCATCGTCTTTCTTGGCGTGGTGGTTGGTGGTCTAGTCACAGCAATGTACTTACCAATCTTT
AATTTGATGAGCGTATTAGGATAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio campbellii strain DS40M4

99.509

100

0.995
  pilC Vibrio cholerae strain A1552

74

98.28

0.727
  pilC Acinetobacter baylyi ADP1

42.714

97.789

0.418
  pilC Acinetobacter baumannii D1279779

40.695

99.017

0.403
  pilC Pseudomonas stutzeri DSM 10701

40.909

97.297

0.398
  pilG Neisseria gonorrhoeae MS11

39.066

100

0.391
  pilC Legionella pneumophila strain ERS1305867

39.356

99.263

0.391
  pilG Neisseria meningitidis 44/76-A

38.235

100

0.383

Multiple sequence alignment