Detailed information NTG1112470

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: KHO06_RS03845
• Genome accession: NZ_HG992751
• Coordinates: 824037..824906 (-)
• Length: 289 a.a.
• NCBI ID: WP_012128879.1
• Uniprot ID: -
• Organism: Vibrio sp. B1FIG11 isolate LMG10946-nano
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 819037..829906

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KHO06_RS03810 (ACOMICROBIO_LOCUS576)	rluF	819546..820700 (-)	1155	WP_212582118.1	23S rRNA pseudouridine(2604) synthase RluF	-
KHO06_RS03815 (ACOMICROBIO_LMKGKHOH_01398)	smrA	820804..821385 (-)	582	WP_038891618.1	DNA endonuclease SmrA	-
KHO06_RS03820 (ACOMICROBIO_LMKGKHOH_01399)	-	821519..821659 (-)	141	WP_010650907.1	DUF3149 domain-containing protein	-
KHO06_RS03830 (ACOMICROBIO_LMKGKHOH_01401)	yacG	822397..822597 (-)	201	WP_012128882.1	DNA gyrase inhibitor YacG	-
KHO06_RS03835 (ACOMICROBIO_LOCUS577)	zapD	822654..823394 (-)	741	WP_012128881.1	cell division protein ZapD	-
KHO06_RS03840 (ACOMICROBIO_LOCUS578)	coaE	823422..824036 (-)	615	WP_045451194.1	dephospho-CoA kinase	-
KHO06_RS03845 (ACOMICROBIO_LOCUS579)	pilD	824037..824906 (-)	870	WP_012128879.1	A24 family peptidase	Machinery gene
KHO06_RS03850 (ACOMICROBIO_LOCUS580)	pilC	824979..826202 (-)	1224	WP_012128878.1	type II secretion system F family protein	Machinery gene
KHO06_RS03855 (ACOMICROBIO_LOCUS581)	pilB	826237..827922 (-)	1686	WP_038891992.1	type IV-A pilus assembly ATPase PilB	Machinery gene
KHO06_RS03860 (ACOMICROBIO_LOCUS582)	-	827930..828355 (-)	426	WP_212582119.1	pilin	-
KHO06_RS03865 (ACOMICROBIO_LOCUS583)	nadC	828621..829508 (-)	888	WP_212582120.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32503.75 Da
• Isoelectric Point: 7.5422

>NTDB_id=1112470 KHO06_RS03845 WP_012128879.1 824037..824906(-) (pilD) [Vibrio sp. B1FIG11 isolate LMG10946-nano]
MEVFQYYPWLFVVFATIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIEPPKETLTLSVPRSSCQQCGTPIRIR
DNIPVISWLLLKGKCHNCQAPISARYPLIELLTAFCSGFIAFHFGFSYFTVALVFFTFVLIAATFIDLDTMLLPDQLTLP
LMWAGIALALAGISPVSLQDSIIGAMAGYLCLWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLIQLRLQKQGIEKAFPFGPYLAIAGWVSLIWGHQILNWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=1112470 KHO06_RS03845 WP_012128879.1 824037..824906(-) (pilD) [Vibrio sp. B1FIG11 isolate LMG10946-nano]
ATGGAAGTATTCCAGTACTACCCATGGCTATTCGTTGTGTTTGCCACAATTTTCGGTTTGATTGTGGGTAGTTTCCTCAA
CGTGGTTATTTACCGTTTACCCAAGATCATGGAACTAGAATGGCGACGTGAGTGCGCTGAATCCTTCCCTGAATATAAGA
TTGAACCACCCAAAGAGACGCTGACGTTAAGCGTACCGCGCTCATCTTGTCAGCAATGCGGAACTCCCATTCGCATCCGA
GACAACATTCCGGTGATTAGCTGGCTATTACTGAAAGGCAAGTGCCACAACTGCCAAGCGCCTATCAGTGCTCGTTACCC
TCTTATTGAACTGCTTACTGCGTTTTGTTCGGGTTTTATCGCTTTTCATTTCGGTTTTAGCTACTTCACTGTAGCGCTGG
TTTTCTTTACCTTTGTATTGATTGCTGCCACGTTTATCGACCTCGATACCATGTTGTTGCCAGACCAACTGACTCTACCA
TTGATGTGGGCAGGTATCGCACTTGCTCTTGCTGGTATCAGTCCTGTCAGCCTACAAGATTCTATCATTGGTGCAATGGC
AGGCTATCTGTGTCTTTGGAGTGTTTACTGGCTGTTTAAACTTCTAACAGGCAAAGAAGGCATGGGCTATGGTGACTTTA
AACTCCTTGCGGCATTGGGCGCTTGGCTGGGTTGGCAATCTCTACCGATGATCATTTTGCTCTCTTCGGTGGTTGGCGTC
ATCTTTGGTCTTATCCAACTGCGCTTGCAAAAACAAGGTATCGAGAAAGCCTTTCCTTTCGGCCCTTACCTTGCGATTGC
TGGCTGGGTAAGCCTAATTTGGGGCCATCAAATCCTCAACTGGTACTTTACGTCGATTCTAGGAGTGTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (135-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	98.616	100	0.986
pilD	Vibrio cholerae strain A1552	75.694	99.654	0.754
pilD	Acinetobacter baumannii D1279779	52.768	93.772	0.495
pilD	Acinetobacter nosocomialis M2	52.399	93.772	0.491
pilD	Neisseria gonorrhoeae MS11	46.014	95.502	0.439