Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   KHO06_RS00215 Genome accession   NZ_HG992751
Coordinates   44059..45168 (+) Length   369 a.a.
NCBI ID   WP_077262045.1    Uniprot ID   -
Organism   Vibrio sp. B1FIG11 isolate LMG10946-nano     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 39059..50168
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHO06_RS00195 (ACOMICROBIO_LOCUS33) rsmB 39967..41262 (-) 1296 WP_212581910.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  KHO06_RS00200 (ACOMICROBIO_LOCUS34) fmt 41343..42290 (-) 948 WP_047482485.1 methionyl-tRNA formyltransferase -
  KHO06_RS00205 (ACOMICROBIO_LOCUS35) def 42324..42842 (-) 519 WP_005450979.1 peptide deformylase -
  KHO06_RS00210 (ACOMICROBIO_LOCUS36) - 42981..44075 (+) 1095 WP_077262046.1 LysM peptidoglycan-binding domain-containing protein -
  KHO06_RS00215 (ACOMICROBIO_LOCUS37) dprA 44059..45168 (+) 1110 WP_077262045.1 DNA-processing protein DprA Machinery gene
  KHO06_RS00220 (ACOMICROBIO_LMKGKHOH_00660) - 45171..45650 (+) 480 WP_005429833.1 DUF494 family protein -
  KHO06_RS00225 (ACOMICROBIO_LOCUS38) - 45674..46243 (+) 570 WP_009708006.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  KHO06_RS00230 (ACOMICROBIO_LOCUS39) - 46308..47441 (-) 1134 WP_012126633.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  KHO06_RS00235 (ACOMICROBIO_LOCUS40) purE 47446..47931 (-) 486 WP_045371955.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  KHO06_RS00240 (ACOMICROBIO_LOCUS41) - 48132..48689 (+) 558 WP_045371958.1 L-threonylcarbamoyladenylate synthase -
  KHO06_RS00245 (ACOMICROBIO_LOCUS42) hemF 48724..49641 (+) 918 WP_045371961.1 oxygen-dependent coproporphyrinogen oxidase -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 39392.04 Da        Isoelectric Point: 5.5790

>NTDB_id=1112465 KHO06_RS00215 WP_077262045.1 44059..45168(+) (dprA) [Vibrio sp. B1FIG11 isolate LMG10946-nano]
MTPQNDIDLAAWLKLSCLPGIGGVKMNKLLSKDTPSNIVQYSTEQLQLLGLTAKQLQAWSQVDKEVDACLTWVAASSHHH
ILTLADALYPPLLKQTVAPPPLLFVKGEASCLSQPQIAMVGSRNASVDGLQHARTFASDLVQHDLIVTSGLALGIDGHAH
DGALLAGGKTIAVLGSGLEQVYPARHRGLAQRVAENGALVSEFRPDAKPRAENFPRRNRIISGLSLGVLVVEAAEKSGSL
ITARYALEQGREVFALPASINAPNASGGNQLIQNGACLVQNTQEVLNEIQSLLDWSINQSLDLFSAPIDEEELPFPQLLA
NVGNEATPVDILASRTNIPVQEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=1112465 KHO06_RS00215 WP_077262045.1 44059..45168(+) (dprA) [Vibrio sp. B1FIG11 isolate LMG10946-nano]
ATGACACCACAAAATGATATTGATCTCGCAGCCTGGTTAAAGCTTAGTTGTTTACCGGGCATCGGTGGGGTCAAGATGAA
TAAGCTGCTCAGTAAAGATACGCCGAGCAATATTGTCCAATATTCCACGGAGCAGCTTCAGCTTTTAGGCTTAACGGCAA
AACAGTTGCAAGCATGGTCGCAGGTCGATAAAGAAGTCGATGCTTGTCTGACTTGGGTTGCAGCATCTTCTCATCATCAT
ATTCTTACTTTGGCGGATGCTTTGTATCCGCCACTTCTCAAACAAACCGTCGCACCGCCTCCTTTACTCTTTGTAAAAGG
AGAGGCGAGCTGTTTGTCTCAACCTCAAATAGCTATGGTTGGCAGCCGTAATGCCAGTGTGGATGGGCTACAACACGCAA
GAACTTTTGCATCTGACTTGGTGCAACACGATCTGATCGTCACTAGTGGCTTAGCATTGGGTATTGATGGCCATGCTCAT
GATGGTGCGCTGTTAGCTGGAGGTAAAACCATCGCAGTGCTTGGCTCGGGATTAGAACAAGTGTACCCAGCAAGACACCG
CGGCTTGGCACAGCGAGTGGCTGAAAATGGAGCGCTTGTTTCAGAGTTTCGTCCAGATGCTAAGCCTCGCGCAGAAAACT
TTCCACGTCGTAATCGAATCATCAGTGGTTTGTCACTGGGTGTTTTGGTGGTGGAAGCGGCTGAAAAAAGTGGCTCCTTG
ATTACGGCGCGTTATGCTTTAGAACAAGGTCGAGAAGTTTTCGCTCTGCCAGCTTCGATTAATGCACCCAACGCCAGTGG
CGGTAATCAATTGATTCAGAACGGAGCTTGTCTCGTACAAAATACTCAAGAGGTGCTGAATGAAATACAGTCTTTGCTCG
ACTGGTCTATTAATCAGAGCTTAGATTTATTTTCTGCGCCAATTGATGAAGAAGAATTGCCATTTCCTCAGCTGTTAGCT
AACGTAGGAAATGAGGCTACACCAGTTGATATTCTTGCAAGCAGGACCAATATACCTGTCCAAGAAGTCATGATGCAGCT
CTTAGAGCTTGAGCTTTCAGGGCATGTTGTTGCAGTATCCGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(307-362)

DNA recombination-mediator protein A (DNA_processg_A)

(77-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

99.458

100

0.995
  dprA Vibrio cholerae strain A1552

58.378

100

0.585
  dprA Glaesserella parasuis strain SC1401

47.721

100

0.482
  dprA Haemophilus influenzae Rd KW20

44.828

94.309

0.423
  dprA Legionella pneumophila strain ERS1305867

46.809

89.16

0.417
  dprA Neisseria meningitidis strain C311

37.34

100

0.396
  dprA Neisseria meningitidis MC58

37.34

100

0.396
  dprA Neisseria gonorrhoeae MS11

36.434

100

0.382
  dprA Neisseria gonorrhoeae strain FA1090

36.176

100

0.379

Multiple sequence alignment