Detailed information NTG1112324

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: P3C56_RS06160
• Genome accession: NZ_HG992338
• Coordinates: 1432026..1433282 (-)
• Length: 418 a.a.
• NCBI ID: WP_275548358.1
• Uniprot ID: A0A8D6YEI5
• Organism: Xanthomonas arboricola pv. corylina strain 301 isolate 301
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1427026..1438282

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
P3C56_RS06150 (XAC301_12320)	coaE	1430501..1431142 (-)	642	WP_275548356.1	dephospho-CoA kinase	-
P3C56_RS06155 (XAC301_12330)	-	1431156..1432019 (-)	864	WP_275548357.1	A24 family peptidase	-
P3C56_RS06160 (XAC301_12340)	pilC	1432026..1433282 (-)	1257	WP_275548358.1	type II secretion system F family protein	Machinery gene
P3C56_RS06165	-	1433629..1434069 (+)	441	WP_104613411.1	pilin	-
P3C56_RS06170	-	1434212..1434619 (+)	408	WP_275544343.1	pilin	-
P3C56_RS06175 (XAC301_12350)	pilB	1434651..1436396 (+)	1746	WP_275548467.1	type IV-A pilus assembly ATPase PilB	Machinery gene
P3C56_RS06180 (XAC301_12370)	pilR	1436610..1438004 (-)	1395	WP_047127086.1	sigma-54 dependent transcriptional regulator	Regulator

Sequence

Protein

• Length: 418 a.a.
• Molecular weight: 45821.22 Da
• Isoelectric Point: 10.2556

>NTDB_id=1112324 P3C56_RS06160 WP_275548358.1 1432026..1433282(-) (pilC) [Xanthomonas arboricola pv. corylina strain 301 isolate 301]
MSVARNVIKKPVDRSTSQLQPFIWEGTDKRGVKMKGEQTARNVNMLRAELRRQGITPNVVKPKPKPLFGAAGKKVTPKDI
SFFSRQMATMMKSGVPIVGSLEIIGEGHKNPRMKQMVGQIRTDIEGGSSLHESISRHPVQFDELYRNLVRAGEGAGVLET
VLDTVATYKENIEALKGKIKKALFYPAMVVVVALVVSAILLVFVVPQFEEVFKGFGAELPAFTQMIVAASRFMVSYWWAL
LVIVAGAVIGFIYAYKRSPRMQHGMDRIILKVPVIGQIMHNSAIARFARTTAVTFKAGVPLVEALGIVAGATGNKVYEEA
VLRMRDDVSVGYPVNMAMKQVNLFPHMVIQMTAIGEEAGALDTMLFKVAEYFEQEVNNAVDALSSLLEPMIMVFIGTIVG
GMVIGMYLPIFKLGAVVG

Nucleotide

• Length: 1257 bp

>NTDB_id=1112324 P3C56_RS06160 WP_275548358.1 1432026..1433282(-) (pilC) [Xanthomonas arboricola pv. corylina strain 301 isolate 301]
ATGTCCGTCGCTCGCAACGTCATCAAAAAACCAGTCGATCGAAGCACAAGCCAGCTGCAGCCGTTTATCTGGGAAGGAAC
GGACAAGCGCGGCGTCAAGATGAAGGGAGAGCAAACAGCGCGCAACGTAAACATGTTGCGCGCCGAACTTCGGCGCCAGG
GTATTACACCAAACGTCGTTAAGCCCAAGCCAAAGCCACTGTTTGGCGCGGCAGGCAAAAAAGTGACTCCTAAGGACATC
TCGTTCTTTAGCCGCCAAATGGCAACCATGATGAAATCCGGCGTACCTATTGTTGGTTCACTGGAAATTATTGGGGAGGG
TCACAAAAACCCACGGATGAAGCAAATGGTTGGTCAGATAAGAACCGATATCGAGGGAGGCTCGTCCCTACATGAATCCA
TTAGCAGACACCCAGTTCAATTTGACGAGCTCTACCGAAACCTAGTCCGCGCAGGTGAAGGCGCGGGCGTGCTAGAAACC
GTACTCGACACAGTTGCAACTTACAAAGAAAATATTGAGGCATTGAAGGGCAAGATCAAGAAAGCTCTTTTCTACCCTGC
GATGGTCGTCGTAGTTGCTCTCGTGGTTAGCGCAATCCTGCTAGTTTTCGTAGTTCCACAGTTCGAAGAGGTTTTCAAGG
GCTTTGGTGCGGAATTACCTGCTTTCACACAAATGATCGTAGCCGCATCGCGCTTTATGGTTAGCTACTGGTGGGCTCTC
TTGGTCATCGTAGCGGGCGCAGTCATTGGTTTCATTTATGCCTACAAGCGCTCGCCACGCATGCAGCACGGCATGGATCG
GATTATCTTAAAGGTACCTGTCATAGGCCAAATCATGCACAACAGCGCGATCGCTCGCTTCGCCCGCACAACTGCCGTTA
CCTTTAAAGCCGGTGTTCCGTTAGTGGAAGCGCTAGGGATTGTGGCTGGCGCCACAGGCAATAAAGTCTACGAAGAAGCC
GTGCTTCGCATGCGAGACGATGTGTCGGTGGGCTACCCGGTCAACATGGCCATGAAACAGGTCAATTTATTCCCGCACAT
GGTGATCCAAATGACTGCCATTGGCGAGGAAGCAGGTGCGCTTGACACTATGCTGTTCAAGGTTGCCGAGTACTTCGAAC
AGGAGGTCAACAATGCTGTGGATGCGCTCAGCAGTTTGTTGGAGCCAATGATCATGGTGTTCATTGGCACCATCGTAGGC
GGCATGGTCATCGGCATGTATCTTCCGATCTTCAAACTCGGCGCAGTGGTTGGATAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (83-206)

• Type II secretion system (T2SS), protein F (T2SSF) (287-409)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Legionella pneumophila strain ERS1305867	53.202	97.129	0.517
pilC	Pseudomonas stutzeri DSM 10701	52.778	94.737	0.5
pilC	Acinetobacter baylyi ADP1	51.117	96.411	0.493
pilC	Acinetobacter baumannii D1279779	50.372	96.411	0.486
pilG	Neisseria gonorrhoeae MS11	43.86	95.455	0.419
pilG	Neisseria meningitidis 44/76-A	43.358	95.455	0.414
pilC	Vibrio cholerae strain A1552	41.25	95.694	0.395
pilC	Vibrio campbellii strain DS40M4	40.447	96.411	0.39