Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   P3C56_RS06180 Genome accession   NZ_HG992338
Coordinates   1436610..1438004 (-) Length   464 a.a.
NCBI ID   WP_047127086.1    Uniprot ID   A0A7U7HJH5
Organism   Xanthomonas arboricola pv. corylina strain 301 isolate 301     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1431610..1443004
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3C56_RS06160 (XAC301_12340) pilC 1432026..1433282 (-) 1257 WP_275548358.1 type II secretion system F family protein Machinery gene
  P3C56_RS06165 - 1433629..1434069 (+) 441 WP_104613411.1 pilin -
  P3C56_RS06170 - 1434212..1434619 (+) 408 WP_275544343.1 pilin -
  P3C56_RS06175 (XAC301_12350) pilB 1434651..1436396 (+) 1746 WP_275548467.1 type IV-A pilus assembly ATPase PilB Machinery gene
  P3C56_RS06180 (XAC301_12370) pilR 1436610..1438004 (-) 1395 WP_047127086.1 sigma-54 dependent transcriptional regulator Regulator
  P3C56_RS06185 (XAC301_12380) - 1438197..1439810 (-) 1614 WP_016901263.1 HAMP domain-containing sensor histidine kinase -
  P3C56_RS06190 (XAC301_12390) sucC 1440042..1441211 (+) 1170 WP_016901264.1 ADP-forming succinate--CoA ligase subunit beta -
  P3C56_RS06195 (XAC301_12400) sucD 1441236..1442111 (+) 876 WP_011038208.1 succinate--CoA ligase subunit alpha -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 50190.57 Da        Isoelectric Point: 6.5112

>NTDB_id=1112326 P3C56_RS06180 WP_047127086.1 1436610..1438004(-) (pilR) [Xanthomonas arboricola pv. corylina strain 301 isolate 301]
MNEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPDGNGIELVTEIAKHYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNRDRPAPPPPPPEQASRLLGDSSAMESLRATIGKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASSESLVDVRILSATHKNLGDLVSDGRFRHDLYYRINVIELRVPPLRERGGDLP
QLAAAIIARLAHSHGRPIPLLTQSALDALDQYGFPGNVRELENILERALALAEDDQISASDLRLPAHGGHRLAATPGSAA
VEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=1112326 P3C56_RS06180 WP_047127086.1 1436610..1438004(-) (pilR) [Xanthomonas arboricola pv. corylina strain 301 isolate 301]
ATGAACGAACCGAAAAGTGCCCTGGTTGTCGATGACGAGCGTGACATTCGCGAACTGCTTGTTCTCACCTTGGGCCGGAT
GGGGCTGCGCATCAGCACCGCCGCCAACCTGGCCGAAGCGCGCGAGCTGCTGGCCAACAATCCCTACGACCTGTGCCTGA
CCGACATGCGGTTGCCCGACGGCAACGGCATTGAACTGGTTACCGAAATCGCCAAGCACTATCCGCAGACCCCGGTGGCG
ATGATCACCGCGTTCGGCAGCATGGACCTGGCGGTGGAAGCTTTGAAGGCCGGCGCCTTCGACTTCGTCAGCAAGCCGGT
GGACATCAGCGTGCTGCGTGGCCTGGTCAAGCACGCCCTGGAATTGAACAACCGCGACCGCCCTGCCCCGCCACCGCCGC
CACCGGAACAGGCCAGCCGCCTGCTCGGCGATTCCAGTGCGATGGAAAGCCTGCGCGCCACCATCGGCAAGGTCGCGCGC
AGCCAGGCGCCGGTCTACATCGTCGGCGAATCGGGCGTGGGCAAGGAACTGGTCGCCCGCACCATCCACGAACAAGGCGC
ACGCGCGGCCGGCCCGTTCGTGCCGGTCAACTGTGGCGCCATCCCCGCCGAACTGATGGAAAGCGAATTCTTCGGCCACA
AGAAGGGCAGCTTCACCGGCGCGCATGCCGACAAGCCCGGCCTGTTCCAGGCCGCGCATGGCGGCACGCTGTTTCTGGAC
GAAGTGGCCGAATTGCCGCTGCAGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAAAAATCGGTGCGCCCGGTGGGCGC
TTCCAGCGAGTCGCTGGTGGACGTGCGCATTCTCTCGGCCACCCACAAGAACCTGGGCGACCTAGTCTCCGACGGCCGTT
TCCGCCACGACCTGTACTACCGCATCAACGTCATCGAACTGCGCGTGCCGCCGCTGCGCGAACGCGGCGGCGACCTGCCG
CAACTGGCCGCGGCCATCATCGCGCGCCTGGCACATAGCCACGGCCGGCCGATTCCGCTGCTGACCCAGTCCGCACTCGA
CGCGCTGGACCAGTACGGCTTTCCCGGCAACGTGCGCGAGCTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAG
ACGACCAGATCAGCGCCAGCGACCTGCGCCTGCCCGCCCACGGCGGCCATCGCCTCGCCGCCACTCCCGGCAGCGCCGCC
GTCGAACCCCGCGAAGCGGTGGTCGACATCGACCCCGCCTCGGCCGCCCTGCCTTCCTACATCGAGCAACTGGAGCGCGC
CGCGATCCAGAAGGCGCTGGAGGAGAATCGCTGGAACAAGACCAAGACCGCCGCGCAGCTGGGCATCACGTTTCGGGCAT
TGCGTTACAAGTTGAAGAAGTTGGGGATGGAGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(421-461)

Response regulator receiver domain (Response_reg)

(8-115)

Sigma-54 interaction domain (Sigma54_activat)

(142-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.067

99.784

0.629
  pilR Acinetobacter baumannii strain A118

49.138

100

0.491

Multiple sequence alignment