Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   ACN076_RS10015 Genome accession   NZ_CP184836
Coordinates   2012153..2014141 (-) Length   662 a.a.
NCBI ID   WP_420789924.1    Uniprot ID   -
Organism   Streptococcus sp. K0074     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2007153..2019141
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN076_RS09995 (ACN076_09995) amiF 2007651..2008577 (-) 927 WP_001291284.1 ATP-binding cassette domain-containing protein Regulator
  ACN076_RS10000 (ACN076_10000) amiE 2008588..2009655 (-) 1068 WP_000159550.1 ABC transporter ATP-binding protein Regulator
  ACN076_RS10005 (ACN076_10005) amiD 2009664..2010590 (-) 927 WP_000103703.1 oligopeptide ABC transporter permease OppC Regulator
  ACN076_RS10010 (ACN076_10010) amiC 2010590..2012086 (-) 1497 WP_060806096.1 ABC transporter permease Regulator
  ACN076_RS10015 (ACN076_10015) amiA3 2012153..2014141 (-) 1989 WP_420789924.1 peptide ABC transporter substrate-binding protein Regulator
  ACN076_RS10025 (ACN076_10025) - 2014576..2015907 (-) 1332 WP_101786092.1 hemolysin family protein -
  ACN076_RS10030 (ACN076_10030) endA 2016062..2016886 (-) 825 WP_101786094.1 DNA-entry nuclease EndA Machinery gene
  ACN076_RS10035 (ACN076_10035) - 2016925..2017113 (-) 189 WP_025169706.1 DNA-directed RNA polymerase subunit beta -
  ACN076_RS10040 (ACN076_10040) murA 2017106..2018389 (-) 1284 WP_420789925.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  ACN076_RS10045 (ACN076_10045) - 2018413..2018643 (-) 231 WP_000250399.1 DUF1146 family protein -

Sequence

Protein


Download         Length: 662 a.a.        Molecular weight: 72542.92 Da        Isoelectric Point: 4.9296

>NTDB_id=1111480 ACN076_RS10015 WP_420789924.1 2012153..2014141(-) (amiA3) [Streptococcus sp. K0074]
MKKSQVLAVAGATLLASGVLAACSNTSSNNAKLAKDYQYVYQTDPETLDYIVSNIDSTSFVTTNAVDGLLANDKYGNLVP
SIAESWTVSKDGLTYTYKIRKDAKWVTAEGEEYAPVTAKDFVTGLKHAVDGKSKGLSIVSSSIKGLEAYIKGETSDFSTV
GVKALDDQTLEYTLNQPETFWNDKTTSGVLMPVNEEFLTSKGEGFGAPTDANSILYNGPFVLKAVTPKSSIEMAKNDAYW
DKENVKIENVKFTFWDGKDQDVIAKGFADGQYSKARIFPTSSTYEKYVADFKDNIYFNEPGAGVATVSLNYGRTTYNHTA
KTSDAQKTSTQKALLNKEFRQALNFAVDRNSYSAQTNGTDGAAVAIRNTFAPYNLQVGKKTFGELVQDSLAKTNSSTWSN
VSLADSQNGLYNEEKAKEVFAKAKSSLQAEGVEFPIHLDALVIQESTAVVNRVQSLKQSIEKVLGSDNVVVDLQQMTQAE
ALPISFSAPTAKEQDWDIHTLLGWNPDYQDPSTFLDQFVLKGGSTRLYLGIDQNTDASVVSKLGLADYGKLLDDANSENQ
DVQKRYEKYAVAQAWLTDNALTIPVMASPKETAVSYVSKVLPFSSSYSVAGLKGENSGYLKYTEVGEKAITKEEYEKARE
KWLKEKTESNEKAQKELASHVK

Nucleotide


Download         Length: 1989 bp        

>NTDB_id=1111480 ACN076_RS10015 WP_420789924.1 2012153..2014141(-) (amiA3) [Streptococcus sp. K0074]
ATGAAAAAAAGTCAAGTGCTTGCTGTAGCGGGGGCTACCTTATTAGCGTCAGGAGTTCTAGCTGCGTGTTCAAACACTAG
TTCAAATAATGCTAAACTAGCAAAAGATTACCAATATGTTTATCAAACAGATCCAGAAACCTTGGATTATATCGTCAGCA
ATATCGATTCAACATCTTTCGTCACAACAAATGCTGTAGATGGTTTGTTGGCTAATGATAAATATGGTAACCTGGTTCCT
TCTATTGCTGAATCATGGACAGTTTCAAAAGATGGTTTGACTTATACCTATAAAATCCGTAAGGATGCTAAATGGGTGAC
AGCAGAGGGAGAAGAATACGCTCCTGTAACTGCTAAAGACTTCGTTACTGGTTTGAAACACGCCGTAGATGGAAAATCAA
AAGGACTTTCAATCGTTAGCTCTTCTATTAAGGGATTAGAAGCCTATATCAAGGGTGAAACAAGCGACTTTTCAACTGTT
GGAGTAAAAGCACTTGATGATCAAACACTAGAATATACCTTGAACCAGCCAGAAACTTTCTGGAATGACAAGACAACTAG
TGGTGTTTTGATGCCGGTTAATGAAGAATTCTTAACTTCAAAAGGGGAAGGTTTTGGTGCCCCAACCGATGCTAACTCTA
TTCTTTATAACGGTCCATTTGTCTTGAAGGCTGTAACTCCAAAATCATCTATCGAGATGGCTAAAAATGATGCTTACTGG
GATAAAGAAAATGTAAAAATTGAGAACGTTAAGTTCACTTTCTGGGATGGTAAGGACCAAGATGTGATTGCCAAAGGTTT
TGCCGATGGTCAATATAGCAAGGCTCGTATCTTCCCTACAAGTTCTACATATGAAAAATATGTGGCTGATTTCAAAGATA
ACATTTACTTTAATGAACCAGGTGCGGGTGTTGCAACTGTCAGCTTGAACTATGGCCGTACAACTTATAACCACACTGCC
AAAACAAGTGATGCCCAAAAGACATCTACTCAGAAAGCATTGCTAAACAAGGAATTCCGTCAAGCCTTGAACTTTGCAGT
CGATCGCAATTCTTACTCAGCTCAAACAAATGGTACAGATGGAGCTGCAGTAGCCATCCGTAATACATTTGCACCTTATA
ATCTTCAAGTTGGTAAGAAAACATTTGGTGAATTGGTACAAGATAGCTTGGCTAAGACAAATTCTTCTACTTGGTCAAAC
GTGTCTCTGGCAGATTCTCAAAATGGCCTTTACAATGAAGAAAAAGCTAAAGAAGTCTTTGCTAAAGCTAAATCAAGCTT
GCAAGCTGAAGGTGTTGAATTCCCAATCCACTTGGATGCCTTGGTTATCCAAGAATCAACAGCGGTTGTAAACCGTGTTC
AATCATTGAAACAATCAATTGAAAAAGTATTGGGTTCAGATAATGTTGTTGTAGACTTACAACAAATGACTCAAGCAGAA
GCTTTACCAATTTCATTTAGCGCTCCAACAGCTAAAGAACAAGACTGGGATATACATACCTTGCTAGGATGGAACCCTGA
CTATCAAGATCCTTCTACTTTCTTGGATCAATTCGTCCTTAAGGGAGGAAGCACTCGCCTTTACCTTGGTATTGACCAAA
ACACAGATGCATCAGTAGTAAGCAAACTTGGTTTAGCTGACTATGGAAAATTACTTGATGACGCAAACAGCGAAAACCAA
GATGTTCAAAAACGTTATGAAAAATACGCAGTAGCACAAGCTTGGTTGACTGACAATGCTTTGACAATTCCAGTAATGGC
TTCTCCTAAAGAAACAGCCGTTTCATATGTTTCAAAAGTTCTACCATTTAGCTCTTCATATTCTGTAGCCGGCCTTAAAG
GTGAAAATTCAGGATACTTGAAGTACACTGAAGTTGGCGAAAAAGCAATTACCAAAGAAGAGTATGAAAAAGCTCGTGAA
AAATGGTTGAAAGAAAAGACTGAGTCAAACGAGAAAGCTCAAAAAGAATTGGCAAGTCATGTGAAGTAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(78-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

54.669

100

0.548
  amiA3 Streptococcus thermophilus LMG 18311

54.367

100

0.545
  amiA Streptococcus salivarius strain HSISS4

53.765

100

0.539

Multiple sequence alignment