Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   ACN076_RS10005 Genome accession   NZ_CP184836
Coordinates   2009664..2010590 (-) Length   308 a.a.
NCBI ID   WP_000103703.1    Uniprot ID   -
Organism   Streptococcus sp. K0074     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2004664..2015590
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN076_RS09985 (ACN076_09985) - 2005314..2006207 (-) 894 WP_001012086.1 ABC transporter permease -
  ACN076_RS09990 (ACN076_09990) - 2006219..2007196 (-) 978 WP_420789923.1 ABC transporter substrate binding protein -
  ACN076_RS09995 (ACN076_09995) amiF 2007651..2008577 (-) 927 WP_001291284.1 ATP-binding cassette domain-containing protein Regulator
  ACN076_RS10000 (ACN076_10000) amiE 2008588..2009655 (-) 1068 WP_000159550.1 ABC transporter ATP-binding protein Regulator
  ACN076_RS10005 (ACN076_10005) amiD 2009664..2010590 (-) 927 WP_000103703.1 oligopeptide ABC transporter permease OppC Regulator
  ACN076_RS10010 (ACN076_10010) amiC 2010590..2012086 (-) 1497 WP_060806096.1 ABC transporter permease Regulator
  ACN076_RS10015 (ACN076_10015) amiA3 2012153..2014141 (-) 1989 WP_420789924.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34642.72 Da        Isoelectric Point: 9.8044

>NTDB_id=1111478 ACN076_RS10005 WP_000103703.1 2009664..2010590(-) (amiD) [Streptococcus sp. K0074]
MSTIDKEKFQFVKRDDFASETIDAPAYSYWKSVFRQFMKKKSTVVMLGILVAIILMSFIYPMFSKFDFNDVSKVNDFSAR
YIKPNAEHWFGTDSNGKSLFDGVWFGARNSILISVIATVINLVIGVFVGGIWGISKSVDRVMMEVYNVISNIPSLLIVIV
LTYSIGAGFWNLIFAMSVTTWIGIAFMIRVQILRYRDLEYNLASRTLGTPTLKIVAKNIMPQLVSVIVTTMTQMLPSFIS
YEAFLSFFGLGLPITVPSLGRLISDYSQNVTTNAYLFWIPLTTLVLVSLSLFVVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=1111478 ACN076_RS10005 WP_000103703.1 2009664..2010590(-) (amiD) [Streptococcus sp. K0074]
ATGTCTACAATCGATAAAGAAAAATTTCAGTTTGTAAAACGTGACGATTTTGCCTCTGAAACTATTGATGCGCCAGCATA
TTCTTACTGGAAATCAGTGTTTAGACAATTTATGAAGAAGAAATCAACTGTAGTCATGTTGGGAATCTTGGTAGCTATCA
TTTTGATGAGTTTCATCTACCCAATGTTTTCTAAGTTTGATTTTAATGATGTCAGCAAAGTAAACGACTTTAGTGCTCGT
TATATCAAGCCAAATGCTGAGCATTGGTTCGGTACAGATAGTAACGGTAAATCTCTCTTTGACGGTGTCTGGTTCGGAGC
TCGTAACTCCATCCTCATTTCTGTGATTGCGACAGTGATTAACTTGGTTATCGGTGTTTTTGTCGGTGGTATTTGGGGGA
TTTCAAAATCAGTTGACCGTGTGATGATGGAAGTTTATAACGTCATCTCAAACATTCCATCTCTTTTGATTGTCATTGTC
TTGACTTACTCAATCGGAGCTGGATTCTGGAATCTGATTTTTGCTATGAGTGTGACAACATGGATTGGAATTGCCTTCAT
GATCCGTGTGCAAATCTTGCGTTACCGTGATTTGGAATACAACTTGGCGTCACGTACTTTGGGAACACCAACCTTGAAGA
TTGTTGCCAAAAATATCATGCCTCAATTGGTATCTGTTATTGTGACAACCATGACTCAAATGCTTCCAAGTTTTATCTCA
TACGAAGCCTTCTTGTCATTCTTCGGTCTTGGACTACCGATTACTGTGCCAAGTTTGGGTCGTTTGATTTCAGATTATTC
ACAAAACGTAACAACCAATGCTTACTTGTTCTGGATTCCATTGACAACTCTTGTCTTGGTATCCTTGTCCCTTTTCGTAG
TTGGTCAAAACTTAGCGGATGCTAGTGATCCACGTACACATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-72)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(124-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

83.442

100

0.834
  amiD Streptococcus thermophilus LMG 18311

82.143

100

0.821
  amiD Streptococcus thermophilus LMD-9

82.143

100

0.821

Multiple sequence alignment