Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   ACN076_RS09995 Genome accession   NZ_CP184836
Coordinates   2007651..2008577 (-) Length   308 a.a.
NCBI ID   WP_001291284.1    Uniprot ID   V8I8Q2
Organism   Streptococcus sp. K0074     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2002651..2013577
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN076_RS09970 (ACN076_09970) racE 2002930..2003724 (-) 795 WP_420789922.1 glutamate racemase -
  ACN076_RS09975 (ACN076_09975) - 2003924..2004172 (-) 249 WP_000364990.1 YneF family protein -
  ACN076_RS09980 (ACN076_09980) - 2004498..2005301 (-) 804 WP_000157661.1 ABC transporter ATP-binding protein -
  ACN076_RS09985 (ACN076_09985) - 2005314..2006207 (-) 894 WP_001012086.1 ABC transporter permease -
  ACN076_RS09990 (ACN076_09990) - 2006219..2007196 (-) 978 WP_420789923.1 ABC transporter substrate binding protein -
  ACN076_RS09995 (ACN076_09995) amiF 2007651..2008577 (-) 927 WP_001291284.1 ATP-binding cassette domain-containing protein Regulator
  ACN076_RS10000 (ACN076_10000) amiE 2008588..2009655 (-) 1068 WP_000159550.1 ABC transporter ATP-binding protein Regulator
  ACN076_RS10005 (ACN076_10005) amiD 2009664..2010590 (-) 927 WP_000103703.1 oligopeptide ABC transporter permease OppC Regulator
  ACN076_RS10010 (ACN076_10010) amiC 2010590..2012086 (-) 1497 WP_060806096.1 ABC transporter permease Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34777.80 Da        Isoelectric Point: 6.5105

>NTDB_id=1111476 ACN076_RS09995 WP_001291284.1 2007651..2008577(-) (amiF) [Streptococcus sp. K0074]
MSEKLVEIKDLEISFGEGSKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSNGDIIFDGQKINGKKSRE
QAAELIRRIQMIFQDPAASLNERATVDYIISEGLYNHHLFKDEEERKEKVKNIIREVGLLAEHLTRYPHEFSGGQRQRIG
IARALVMQPDFVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGVIVEVAETEELFN
NPIHPYTQALLSAVPIPDPILERKKVLKVYDPSQHDYETDKPSMVEIRPGHYVWANQAELARYQQGLN

Nucleotide


Download         Length: 927 bp        

>NTDB_id=1111476 ACN076_RS09995 WP_001291284.1 2007651..2008577(-) (amiF) [Streptococcus sp. K0074]
ATGTCTGAAAAATTAGTAGAAATCAAAGATTTAGAAATTTCCTTCGGTGAAGGAAGTAAGAAGTTTGTCGCAGTTAAAAA
TGCTAACTTCTTTATCAACAAGGGAGAAACTTTCTCGCTTGTAGGTGAGTCAGGTAGTGGGAAAACAACTATTGGTCGTG
CCATCATCGGTCTTAATGATACAAGTAATGGGGATATCATTTTTGATGGTCAAAAGATTAATGGTAAGAAATCGCGTGAA
CAAGCTGCAGAATTGATTCGTCGTATCCAGATGATTTTTCAAGATCCTGCCGCAAGTTTGAATGAACGTGCGACTGTTGA
TTATATTATTTCTGAAGGTCTTTACAATCATCATCTGTTCAAGGATGAAGAAGAACGTAAAGAGAAAGTTAAAAATATTA
TCCGTGAAGTGGGGCTTCTTGCTGAGCACTTGACTCGTTACCCTCATGAATTCTCAGGTGGTCAACGTCAACGTATCGGT
ATTGCCCGTGCCTTGGTCATGCAACCAGACTTTGTTATTGCGGATGAGCCCATTTCAGCCTTGGACGTTTCTGTGCGTGC
TCAAGTCTTGAACTTGCTCAAAAAATTCCAAAAAGAACTTGGTTTGACCTATCTCTTCATCGCCCATGACTTGTCTGTCG
TTCGCTTTATTTCAGATCGTATCGCAGTTATTTACAAGGGTGTTATTGTAGAGGTTGCAGAAACAGAAGAATTGTTTAAC
AATCCAATTCATCCATATACTCAAGCCTTGCTTTCAGCGGTACCAATCCCAGATCCAATCTTGGAACGTAAGAAGGTCTT
GAAGGTTTACGACCCAAGTCAACACGACTATGAGACTGATAAGCCATCTATGGTAGAAATCCGTCCAGGTCACTATGTTT
GGGCTAACCAAGCCGAATTAGCGCGTTACCAACAAGGGTTAAACTAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)

ABC transporter (ABC_tran)

(25-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB V8I8Q2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

85.902

99.026

0.851
  amiF Streptococcus salivarius strain HSISS4

85.902

99.026

0.851
  amiF Streptococcus thermophilus LMD-9

85.574

99.026

0.847

Multiple sequence alignment