Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACOI0R_RS07290 Genome accession   NZ_CP184802
Coordinates   390565..391791 (-) Length   408 a.a.
NCBI ID   WP_341488890.1    Uniprot ID   -
Organism   Photobacterium damselae subsp. piscicida strain DQ-SS1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 385565..396791
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACOI0R_RS07265 mutT 387371..387811 (-) 441 WP_420745475.1 8-oxo-dGTP diphosphatase MutT -
  ACOI0R_RS07270 yacG 387878..388087 (-) 210 WP_005297592.1 DNA gyrase inhibitor YacG -
  ACOI0R_RS07275 zapD 388095..388832 (-) 738 WP_420745476.1 cell division protein ZapD -
  ACOI0R_RS07280 coaE 388900..389502 (-) 603 WP_420745477.1 dephospho-CoA kinase -
  ACOI0R_RS07285 pilD 389504..390382 (-) 879 WP_065170821.1 prepilin peptidase Machinery gene
  ACOI0R_RS07290 pilC 390565..391791 (-) 1227 WP_341488890.1 type II secretion system F family protein Machinery gene
  ACOI0R_RS07295 pilB 391857..393548 (-) 1692 WP_237029686.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACOI0R_RS07300 - 393548..394045 (-) 498 WP_420745478.1 pilin -
  ACOI0R_RS07305 ampD 394513..395091 (+) 579 WP_138222126.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  ACOI0R_RS07310 pdhR 395451..396224 (+) 774 WP_176285891.1 pyruvate dehydrogenase complex transcriptional repressor PdhR -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45044.21 Da        Isoelectric Point: 10.0330

>NTDB_id=1111331 ACOI0R_RS07290 WP_341488890.1 390565..391791(-) (pilC) [Photobacterium damselae subsp. piscicida strain DQ-SS1]
MAQLAANKIRYYRWRGVNQGGKKITGVTLGFQEQEVRAQLTEQMIQVKKIKRTNPSTLDKIRNQMKSSDVTAITRQLATM
IESGVPIVQALKLMASSHHKAEVRAVLTQVNTQVEAGASLSKALKSSSPLFDNFYCDLVATGEETGYLGQVFVRLATYRE
KSEAMRKKVIKAMIYPSMVMLTAISVTILMLVFVIPQFAAIFGSFGAELPWFTRQVLKASDFLINYGGYLAVGLLLVLVL
YRYSYKRSYSFRLRMARLSLRLPIIGNVVLKATIARFARTLATTFSAGIPLLTGLQSAGKTAGNLHIEEAIMEAHTSAAA
GMPLYLSLRQCNVFPELMLQMTMIGEESGSLDDMLNKMASLYENDVDNIVDNLGQILEPLIIIVLGVLIGGLLVAMYMPI
FTLMSVIG

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=1111331 ACOI0R_RS07290 WP_341488890.1 390565..391791(-) (pilC) [Photobacterium damselae subsp. piscicida strain DQ-SS1]
ATGGCACAGTTAGCCGCTAATAAAATCCGTTATTATCGCTGGCGAGGAGTAAACCAAGGCGGCAAGAAAATCACAGGCGT
AACCTTAGGTTTTCAAGAACAAGAAGTGCGAGCGCAACTGACCGAGCAGATGATCCAAGTAAAAAAGATCAAGCGCACCA
ATCCCTCTACGCTCGACAAAATCCGCAATCAGATGAAAAGCAGCGATGTAACGGCTATTACTCGCCAACTTGCGACCATG
ATCGAATCTGGAGTTCCGATTGTACAAGCTCTGAAGCTAATGGCCAGTAGCCACCATAAGGCAGAAGTGCGTGCGGTATT
AACTCAGGTCAACACTCAAGTAGAAGCCGGAGCCTCACTGTCAAAAGCGCTAAAATCAAGTTCGCCGCTGTTTGATAATT
TCTACTGTGACTTAGTCGCAACCGGGGAAGAAACCGGGTATCTCGGTCAGGTATTTGTTCGCTTAGCCACGTATCGAGAA
AAAAGCGAAGCGATGCGAAAAAAAGTGATTAAGGCGATGATTTACCCATCCATGGTGATGCTAACGGCCATCAGTGTCAC
TATCTTAATGCTGGTCTTTGTTATCCCTCAATTTGCCGCTATTTTTGGCAGTTTTGGCGCAGAACTCCCTTGGTTTACTC
GCCAAGTATTAAAAGCCTCGGATTTCCTAATTAACTATGGGGGATACTTAGCTGTAGGTTTGCTGCTTGTACTTGTGCTT
TATCGTTATAGCTATAAACGGTCCTATTCGTTTCGGTTACGTATGGCTCGGTTAAGCTTACGCCTGCCCATTATCGGTAA
CGTCGTACTCAAAGCAACTATTGCCCGTTTTGCTCGAACCCTTGCGACCACTTTTAGTGCTGGTATTCCCCTACTAACAG
GTCTACAGTCGGCTGGAAAAACCGCAGGCAACTTACATATAGAAGAGGCCATTATGGAAGCACATACCAGTGCAGCGGCG
GGGATGCCACTCTATTTATCTTTGCGCCAATGCAATGTTTTTCCAGAGCTTATGTTGCAGATGACCATGATCGGGGAAGA
GTCCGGCTCTCTTGACGATATGCTCAATAAAATGGCAAGCCTATATGAAAACGATGTCGATAATATCGTTGATAACCTCG
GCCAAATTTTAGAGCCTTTGATCATCATTGTGCTTGGCGTTCTGATCGGTGGTTTACTCGTGGCAATGTATATGCCGATC
TTCACCCTAATGAGCGTTATTGGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)

Type II secretion system (T2SS), protein F (T2SSF)

(74-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio campbellii strain DS40M4

55.087

98.775

0.544
  pilC Vibrio cholerae strain A1552

55.25

98.039

0.542
  pilG Neisseria meningitidis 44/76-A

41.975

99.265

0.417
  pilG Neisseria gonorrhoeae MS11

41.975

99.265

0.417
  pilC Acinetobacter baumannii D1279779

40.441

100

0.404
  pilC Pseudomonas stutzeri DSM 10701

40.049

99.755

0.4
  pilC Acinetobacter baylyi ADP1

39.547

97.304

0.385
  pilC Legionella pneumophila strain ERS1305867

38.191

97.549

0.373

Multiple sequence alignment