Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   ACNR93_RS08905 Genome accession   NZ_CP184736
Coordinates   1812573..1813832 (-) Length   419 a.a.
NCBI ID   WP_420543620.1    Uniprot ID   -
Organism   Streptococcus equinus strain NM-2-29     
Function   require for competence (predicted from homology)   
Unclear

Genomic Context

Location: 1807573..1818832
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNR93_RS08870 (ACNR93_08870) - 1807660..1809237 (-) 1578 WP_420543619.1 DUF2079 domain-containing protein -
  ACNR93_RS08875 (ACNR93_08875) - 1809280..1809408 (-) 129 WP_021143294.1 hypothetical protein -
  ACNR93_RS08880 (ACNR93_08880) - 1809508..1809825 (-) 318 WP_006531413.1 DUF1292 domain-containing protein -
  ACNR93_RS08885 (ACNR93_08885) ruvX 1809858..1810277 (-) 420 WP_004233508.1 Holliday junction resolvase RuvX -
  ACNR93_RS08890 (ACNR93_08890) - 1810274..1810543 (-) 270 WP_004233510.1 IreB family regulatory phosphoprotein -
  ACNR93_RS08895 (ACNR93_08895) spx 1810773..1811171 (-) 399 WP_004233512.1 transcriptional regulator Spx -
  ACNR93_RS08900 (ACNR93_08900) recA 1811369..1812523 (-) 1155 WP_004233517.1 recombinase RecA Machinery gene
  ACNR93_RS08905 (ACNR93_08905) cinA 1812573..1813832 (-) 1260 WP_420543620.1 competence/damage-inducible protein A Machinery gene
  ACNR93_RS08910 (ACNR93_08910) - 1813946..1815148 (-) 1203 WP_420543621.1 MFS transporter -
  ACNR93_RS08915 (ACNR93_08915) - 1815271..1815828 (-) 558 WP_198362632.1 DNA-3-methyladenine glycosylase I -
  ACNR93_RS08920 (ACNR93_08920) ruvA 1815858..1816451 (-) 594 WP_024344431.1 Holliday junction branch migration protein RuvA -
  ACNR93_RS08925 (ACNR93_08925) mutL 1816452..1818395 (-) 1944 WP_420543622.1 DNA mismatch repair endonuclease MutL -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45717.07 Da        Isoelectric Point: 4.9101

>NTDB_id=1110981 ACNR93_RS08905 WP_420543620.1 1812573..1813832(-) (cinA) [Streptococcus equinus strain NM-2-29]
MKAEIIAVGTEILTGQITNTNAQFLSEEFAKLGIDVFFQTAVGDNEERLLSTIDLASKRSDLVVLCGGLGPTEDDLTKQT
LAKYLGRNLVFDEQASKRLDEFFATRPQFTRTVNNERQAQLIDGSTPLQNSTGLAVGGVLEVDGVTYVVLPGPPSELKPM
VWDYLVPLLSSDHKQLYSRVLRFFGIGESQLVTVLSDLIENQTDPTIAPYAKTGEVTLRLSTKADDLETAKAKLDELEHK
ILAKKTLNSIPLENLLYGYGDDNSMARVVFDLLKQKHKTITAAESLTAGLFQSSIADFPGSSEVFNGGFVTYSIEEKAKM
LQIPLKDLQEHGVVSHFTAEKMAEQSRLLTDADFGIGLTGVAGPDGLEGHPAGTVFIGIATKEKVHSIRVVIGGRSRSDV
RHIACLYAFNLVRQALLQD

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=1110981 ACNR93_RS08905 WP_420543620.1 1812573..1813832(-) (cinA) [Streptococcus equinus strain NM-2-29]
ATGAAAGCTGAAATCATTGCTGTTGGAACAGAGATTTTAACAGGGCAAATCACAAATACGAATGCACAATTTCTATCAGA
GGAATTTGCTAAGTTAGGGATTGATGTCTTTTTCCAAACGGCAGTTGGGGACAATGAAGAACGTCTGCTGTCTACCATTG
ATTTGGCAAGTAAACGCAGTGATTTAGTTGTTCTTTGCGGTGGTTTAGGACCAACCGAAGATGATTTAACAAAACAAACT
TTGGCAAAATATCTAGGACGTAACTTGGTTTTTGATGAACAGGCAAGTAAACGTTTGGATGAATTCTTTGCGACACGTCC
GCAATTTACAAGAACAGTTAACAATGAACGTCAGGCTCAATTGATTGATGGGTCAACACCTCTTCAAAATAGTACGGGAC
TTGCTGTAGGTGGTGTTCTGGAAGTTGATGGTGTTACTTATGTCGTTCTTCCTGGACCACCAAGTGAATTAAAGCCTATG
GTTTGGGACTATTTAGTGCCATTGCTATCTAGTGACCACAAGCAATTGTATTCACGTGTCTTACGTTTCTTTGGTATCGG
GGAAAGTCAGTTGGTAACTGTTTTGTCAGATTTGATTGAAAATCAAACAGACCCAACAATCGCTCCATATGCCAAAACAG
GTGAAGTGACACTTAGATTGTCAACGAAGGCTGATGACCTTGAAACAGCTAAAGCTAAGTTGGATGAGCTTGAGCATAAG
ATTCTTGCTAAGAAGACTTTAAATAGTATTCCGCTTGAAAATTTGCTTTATGGATACGGTGATGATAATAGTATGGCGCG
TGTTGTTTTTGATTTACTTAAGCAAAAACACAAGACTATTACGGCTGCAGAAAGTTTGACAGCTGGTCTGTTTCAATCAA
GTATTGCTGATTTTCCAGGCTCTTCAGAAGTTTTTAATGGTGGTTTTGTGACTTATAGCATTGAAGAAAAGGCAAAAATG
CTTCAAATCCCTTTAAAAGATTTACAAGAACATGGGGTTGTGAGTCATTTTACAGCTGAAAAAATGGCTGAGCAGTCACG
ATTGCTGACAGACGCTGATTTTGGAATTGGCTTAACAGGAGTTGCTGGTCCAGATGGTCTAGAAGGTCATCCAGCGGGAA
CAGTTTTCATAGGTATTGCTACAAAAGAAAAAGTTCATTCTATCCGTGTTGTTATAGGTGGACGAAGCCGTTCAGATGTG
CGTCATATTGCATGTTTGTATGCTTTTAACTTAGTACGTCAAGCTTTATTACAAGACTAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Competence-damaged protein (CinA)

(263-415)

Damage-inducible protein CinA KH domain (CinA_KH)

(178-241)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mutans UA159

72.182

99.523

0.718
  cinA Streptococcus mitis SK321

71.122

100

0.711
  cinA Streptococcus mitis NCTC 12261

70.406

100

0.704
  cinA Streptococcus pneumoniae Rx1

69.212

100

0.692
  cinA Streptococcus pneumoniae TIGR4

69.212

100

0.692
  cinA Streptococcus pneumoniae R6

69.212

100

0.692
  cinA Streptococcus pneumoniae D39

68.974

100

0.69
  cinA Streptococcus suis isolate S10

53.846

99.284

0.535
  cinA Bacillus subtilis subsp. subtilis str. 168

45.261

100

0.456

Multiple sequence alignment