Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   ACN08A_RS12100 Genome accession   NZ_CP184653
Coordinates   2397332..2398579 (+) Length   415 a.a.
NCBI ID   WP_311898197.1    Uniprot ID   A0AAW8TSG3
Organism   Enterococcus cecorum strain 2023EC-GS-SDAU-1     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2392332..2403579
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN08A_RS12080 (ACN08A_12120) - 2393722..2394447 (+) 726 WP_087663263.1 ABC transporter ATP-binding protein -
  ACN08A_RS12085 (ACN08A_12125) - 2394444..2395520 (+) 1077 WP_311898202.1 ABC transporter permease -
  ACN08A_RS12090 (ACN08A_12130) - 2395640..2396578 (+) 939 WP_243178470.1 helix-turn-helix domain-containing protein -
  ACN08A_RS12095 (ACN08A_12135) pgsA 2396689..2397267 (+) 579 WP_087402358.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACN08A_RS12100 (ACN08A_12140) cinA 2397332..2398579 (+) 1248 WP_311898197.1 competence/damage-inducible protein A Machinery gene
  ACN08A_RS12105 (ACN08A_12145) recA 2398703..2399758 (+) 1056 WP_087663259.1 recombinase RecA Machinery gene
  ACN08A_RS12110 (ACN08A_12150) rny 2399976..2401535 (+) 1560 WP_016250397.1 ribonuclease Y -
  ACN08A_RS12115 (ACN08A_12155) - 2401800..2403158 (-) 1359 WP_311898756.1 ISL3 family transposase -

Sequence

Protein


Download         Length: 415 a.a.        Molecular weight: 45571.93 Da        Isoelectric Point: 5.0203

>NTDB_id=1110617 ACN08A_RS12100 WP_311898197.1 2397332..2398579(+) (cinA) [Enterococcus cecorum strain 2023EC-GS-SDAU-1]
MNAEIIAVGTEILMGQIVNSNAAYLSEQLANLGINVYYHVAVGDNEKRLTACLERAKSRSDLIVLCGGLGPTQDDLTKQT
VAKFVNQELVYDPTGHARLMDYFAKTKREMTENNLLQALTFKDGRGIANPNGLAVGIYYEDSDHTHYLLLPGPPRELKAM
FRQNVVPLLREINPQDTKLYSRVLRFYGIGESQLVTLLADFINHQTNPTLAPYAKTNEVTLRLTANASTQDQADRLLDEL
EEKIQALAGAYFYGYGDDFSLAEAMIAQLKEQKRTISVAESLTAGLFASTLGQYPGVSQVFKGGVVTYSLEMKAALLDID
ADYLREVGTVSEACVTLMAKNMQQKAQTDYAIAFSGVAGPDQLEGQAVGTVWMALATPNGVQTYCKQFPHGRNEIRQAAV
MFGLNLVYRALLAEA

Nucleotide


Download         Length: 1248 bp        

>NTDB_id=1110617 ACN08A_RS12100 WP_311898197.1 2397332..2398579(+) (cinA) [Enterococcus cecorum strain 2023EC-GS-SDAU-1]
ATGAATGCAGAAATCATTGCAGTCGGAACAGAGATTTTGATGGGGCAAATCGTTAATTCTAACGCGGCCTATCTTTCAGA
GCAATTAGCCAATTTGGGGATTAATGTTTATTATCATGTCGCAGTCGGAGATAATGAAAAGCGATTGACGGCCTGTCTTG
AACGCGCCAAAAGTCGGAGTGATTTAATCGTGCTTTGTGGTGGTTTGGGGCCTACGCAAGATGATTTAACCAAGCAAACT
GTAGCCAAATTTGTCAATCAAGAATTAGTCTATGATCCAACAGGGCATGCACGTTTGATGGATTATTTTGCCAAGACCAA
GCGAGAAATGACCGAAAATAATTTATTACAAGCTCTCACTTTTAAGGATGGTCGTGGTATTGCCAATCCAAATGGTCTAG
CGGTCGGTATTTATTATGAAGATAGCGATCATACTCACTATTTATTATTGCCTGGGCCACCGCGCGAGTTAAAGGCGATG
TTTCGTCAAAATGTTGTGCCACTTTTGCGTGAAATCAATCCGCAAGATACGAAGCTCTATTCTCGGGTGTTGCGTTTTTA
TGGTATTGGCGAATCGCAGTTAGTCACGCTTTTAGCGGATTTCATTAACCATCAGACCAACCCTACGCTAGCTCCCTATG
CCAAAACCAATGAAGTGACGTTGCGTTTGACAGCCAATGCATCTACCCAAGATCAAGCGGATAGGTTGCTTGATGAATTA
GAGGAGAAAATTCAAGCTTTGGCCGGTGCTTACTTTTATGGTTATGGGGATGATTTTTCTTTAGCGGAGGCGATGATTGC
CCAATTAAAAGAGCAAAAACGGACAATCAGTGTGGCTGAGAGTTTGACAGCCGGCCTTTTTGCTTCCACCTTGGGACAAT
ATCCGGGGGTGTCACAGGTCTTTAAAGGTGGTGTGGTCACTTATTCCCTTGAGATGAAGGCGGCTTTATTAGATATTGAT
GCCGATTATTTACGAGAAGTTGGGACGGTGAGTGAAGCTTGTGTCACCTTAATGGCTAAAAATATGCAGCAAAAAGCGCA
AACGGATTATGCCATTGCTTTTAGTGGTGTGGCGGGACCGGATCAATTAGAAGGCCAAGCAGTCGGAACTGTCTGGATGG
CTTTGGCGACTCCAAATGGGGTACAGACCTATTGCAAACAGTTCCCCCATGGCCGCAATGAAATCCGCCAAGCCGCTGTC
ATGTTTGGGTTAAATCTCGTTTATCGCGCGCTTTTAGCGGAAGCATAG

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(260-410)

Damage-inducible protein CinA KH domain (CinA_KH)

(181-254)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus pneumoniae TIGR4

51.3

100

0.523
  cinA Streptococcus mitis SK321

51.064

100

0.52
  cinA Streptococcus pneumoniae Rx1

51.064

100

0.52
  cinA Streptococcus pneumoniae R6

51.064

100

0.52
  cinA Streptococcus mutans UA159

51.313

100

0.518
  cinA Streptococcus pneumoniae D39

50.827

100

0.518
  cinA Streptococcus mitis NCTC 12261

50.355

100

0.513
  cinA Streptococcus suis isolate S10

47.273

92.771

0.439
  cinA Bacillus subtilis subsp. subtilis str. 168

44.146

98.795

0.436

Multiple sequence alignment