Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   ACKTSL_RS00520 Genome accession   NZ_AP035890
Coordinates   106490..107737 (+) Length   415 a.a.
NCBI ID   WP_322380771.1    Uniprot ID   -
Organism   Enterococcus cecorum strain SMUHEc01     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 101490..112737
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKTSL_RS00500 (SMUE_01000) - 102880..103605 (+) 726 WP_087663263.1 ABC transporter ATP-binding protein -
  ACKTSL_RS00505 (SMUE_01010) - 103602..104678 (+) 1077 WP_322391725.1 ABC transporter permease -
  ACKTSL_RS00510 (SMUE_01020) - 104798..105736 (+) 939 WP_281956610.1 helix-turn-helix domain-containing protein -
  ACKTSL_RS00515 (SMUE_01030) pgsA 105847..106425 (+) 579 WP_087213988.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACKTSL_RS00520 (SMUE_01040) cinA 106490..107737 (+) 1248 WP_322380771.1 competence/damage-inducible protein A Machinery gene
  ACKTSL_RS00525 (SMUE_01050) recA 107861..108916 (+) 1056 WP_087213931.1 recombinase RecA Machinery gene
  ACKTSL_RS00530 (SMUE_01060) rny 109135..110694 (+) 1560 WP_407858281.1 ribonuclease Y -
  ACKTSL_RS00535 (SMUE_01070) - 110912..111133 (+) 222 WP_047342023.1 helix-turn-helix transcriptional regulator -
  ACKTSL_RS00540 (SMUE_01080) - 111120..111881 (+) 762 WP_407858282.1 DUF3169 family protein -

Sequence

Protein


Download         Length: 415 a.a.        Molecular weight: 45584.88 Da        Isoelectric Point: 4.7690

>NTDB_id=110912 ACKTSL_RS00520 WP_322380771.1 106490..107737(+) (cinA) [Enterococcus cecorum strain SMUHEc01]
MNAEIIAVGTEILMGQIVNSNAAYLSEQLANLGINVYYHVAVGDNEKRLTACLERAKSRSDLIVLCGGLGPTQDDLTKQT
VAKFVNQELVYDPTGYARLMDYFAKTKREMTENNLLQALTFKDGRGIANPNGLAVGIYYEDSDHTHYLLLPGPPRELKAM
FRQNVVPLLREINPQDTKLYSRVLRFYGIGESQLVTLLADFIDHQTNPTLAPYAKTNEVTLRLTANASTQDQADRLLDEL
EENIQALAGAYFYGYGDDFSLAEAMIAQLKEQKRTISVAESLTAGLFASTLGQYPGVSQVFKGGVVTYSLEMKAALLDID
ADYLREVGTVSEACVTLMAKNMQQKAQTDYAIAFSGVAGPDQLEGQAVGTVWMALATPNGVQTYCKQFPHGRNEIRQAAV
MFGLNLVYRALLAEA

Nucleotide


Download         Length: 1248 bp        

>NTDB_id=110912 ACKTSL_RS00520 WP_322380771.1 106490..107737(+) (cinA) [Enterococcus cecorum strain SMUHEc01]
ATGAATGCAGAAATCATTGCAGTCGGAACAGAGATTTTGATGGGGCAAATCGTTAATTCTAACGCGGCCTATCTTTCAGA
GCAATTAGCCAATTTGGGGATTAATGTTTATTATCATGTCGCAGTCGGAGATAATGAAAAGCGATTGACGGCCTGTCTTG
AACGTGCCAAAAGTCGGAGTGATTTAATCGTGCTTTGTGGTGGTTTGGGGCCTACGCAAGATGATTTAACCAAGCAAACT
GTAGCCAAATTTGTCAATCAAGAATTAGTCTATGATCCAACAGGGTATGCACGTTTGATGGATTATTTTGCCAAGACCAA
GCGAGAAATGACCGAAAATAATTTATTACAAGCCCTCACTTTTAAGGATGGTCGTGGTATTGCCAATCCAAATGGTCTAG
CGGTCGGTATTTATTATGAAGATAGCGATCATACTCACTATTTATTATTGCCTGGGCCACCGCGCGAGTTAAAGGCGATG
TTTCGTCAAAATGTTGTGCCACTTTTGCGTGAAATCAATCCGCAAGATACGAAGCTCTATTCTCGGGTGTTGCGTTTTTA
TGGTATTGGCGAATCGCAGTTAGTCACGCTTTTAGCGGATTTCATTGACCATCAGACCAACCCTACGCTAGCTCCCTATG
CCAAAACCAATGAAGTGACGTTGCGTTTGACAGCCAATGCATCTACCCAAGATCAAGCGGATAGGTTGCTTGATGAATTA
GAGGAGAACATTCAAGCTTTGGCCGGTGCTTACTTTTATGGTTATGGGGATGATTTTTCTTTAGCGGAGGCGATGATTGC
CCAATTAAAAGAGCAAAAACGGACAATCAGTGTGGCTGAGAGTTTGACAGCCGGCCTTTTTGCTTCCACCTTGGGACAAT
ATCCGGGGGTGTCACAGGTCTTTAAAGGTGGTGTGGTCACTTATTCCCTTGAGATGAAGGCGGCTTTATTAGATATTGAT
GCCGATTATTTACGAGAAGTCGGGACGGTGAGTGAAGCTTGTGTCACCTTAATGGCTAAAAATATGCAGCAAAAAGCGCA
AACGGATTATGCCATTGCTTTTAGTGGTGTGGCGGGACCGGATCAATTAGAAGGCCAAGCAGTCGGAACTGTCTGGATGG
CTTTGGCGACTCCAAATGGGGTACAGACCTATTGCAAACAGTTCCCCCATGGCCGCAATGAAATCCGCCAAGCCGCTGTC
ATGTTTGGGTTAAATCTCGTTTATCGCGCGCTTTTAGCGGAAGCATAG

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(260-410)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-170)

Damage-inducible protein CinA KH domain (CinA_KH)

(181-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus pneumoniae TIGR4

51.537

100

0.525
  cinA Streptococcus pneumoniae Rx1

51.3

100

0.523
  cinA Streptococcus pneumoniae R6

51.3

100

0.523
  cinA Streptococcus mitis SK321

51.3

100

0.523
  cinA Streptococcus pneumoniae D39

51.064

100

0.52
  cinA Streptococcus mutans UA159

51.074

100

0.516
  cinA Streptococcus mitis NCTC 12261

50.591

100

0.516
  cinA Streptococcus suis isolate S10

47.532

92.771

0.441
  cinA Bacillus subtilis subsp. subtilis str. 168

44.39

98.795

0.439

Multiple sequence alignment