Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACLKMZ_RS01575 Genome accession   NZ_CP183909
Coordinates   338983..340209 (-) Length   408 a.a.
NCBI ID   WP_180056208.1    Uniprot ID   -
Organism   Acinetobacter gandensis strain M1_NDM_tet(X3)     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 333983..345209
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLKMZ_RS01550 - 335303..335626 (+) 324 WP_067763086.1 pyrimidine/purine nucleoside phosphorylase -
  ACLKMZ_RS01555 rlmB 335802..336551 (+) 750 WP_067763084.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  ACLKMZ_RS01560 - 336575..337495 (+) 921 WP_180056205.1 DMT family transporter -
  ACLKMZ_RS01565 coaE 337511..338113 (-) 603 WP_180056206.1 dephospho-CoA kinase -
  ACLKMZ_RS01570 pilD 338123..338983 (-) 861 WP_180056207.1 prepilin peptidase Machinery gene
  ACLKMZ_RS01575 pilC 338983..340209 (-) 1227 WP_180056208.1 type II secretion system F family protein Machinery gene
  ACLKMZ_RS01580 pilB 340242..341952 (-) 1711 Protein_302 type IV-A pilus assembly ATPase PilB -
  ACLKMZ_RS01585 tpiA 342228..343019 (+) 792 WP_411691567.1 triose-phosphate isomerase -
  ACLKMZ_RS01590 secG 343033..343362 (+) 330 WP_067763070.1 preprotein translocase subunit SecG -
  ACLKMZ_RS01625 rimP 344432..344956 (+) 525 WP_180056211.1 ribosome maturation factor RimP -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44823.16 Da        Isoelectric Point: 9.8207

>NTDB_id=1107155 ACLKMZ_RS01575 WP_180056208.1 338983..340209(-) (pilC) [Acinetobacter gandensis strain M1_NDM_tet(X3)]
MAVKKAQMMPTFSYEGVDRKGAKIKGELPSRNMALAKVTLRKQGITIRTIREKRKNILEGLMKKKVSTLDITVFTRQLAT
MMKAGVPLVQGFEIVAEGLENPAMREVVLGIKGEVEGGNTFAGALRKYPQYFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPAAVIVVAVIVTIILMVKVVPVFQDLFSSFGADLPAFTKMVVNMSEWMQKYWFFLIIGIGAVIA
GFMETKKRSKAFRDFLDKAALKAPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVVYETAVMKIREDVA
TGQQLQFAMRVTDKFPSMAIQMVAIGEESGALDAMLDKVATHYENEVDNAVDGLTSMMEPLIMAVLGVLVGGLVIAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=1107155 ACLKMZ_RS01575 WP_180056208.1 338983..340209(-) (pilC) [Acinetobacter gandensis strain M1_NDM_tet(X3)]
ATGGCTGTAAAAAAAGCGCAGATGATGCCAACCTTCAGTTATGAAGGTGTAGATCGCAAAGGGGCAAAAATTAAAGGGGA
ATTGCCTTCTCGCAACATGGCTTTGGCTAAAGTGACCTTACGTAAGCAAGGTATTACCATTCGAACCATTCGGGAAAAGC
GTAAAAACATTCTTGAAGGTTTGATGAAGAAAAAAGTCTCAACTTTAGATATTACCGTCTTCACTCGCCAACTTGCGACC
ATGATGAAAGCAGGTGTTCCACTGGTTCAAGGTTTTGAAATTGTTGCGGAAGGCTTAGAAAATCCAGCAATGCGTGAAGT
TGTGCTCGGCATCAAAGGTGAGGTCGAGGGGGGGAATACCTTTGCGGGTGCGCTGCGAAAATATCCTCAATATTTTGACA
ATTTATTTTGCTCTTTGGTTGAATCCGGTGAACAATCGGGTGCTTTAGAAACCATGTTAGATCGTGTAGCGATTTATAAA
GAAAAAAGTGAATTGCTCAAGCAAAAAATTAAGAAAGCCATGAAATATCCTGCTGCAGTCATTGTTGTAGCAGTGATTGT
CACTATCATTTTGATGGTTAAGGTTGTACCAGTATTCCAAGATCTTTTTAGTTCATTTGGTGCAGATCTTCCTGCTTTTA
CCAAAATGGTCGTCAACATGTCAGAATGGATGCAGAAATATTGGTTCTTTCTGATCATCGGTATTGGTGCGGTCATCGCG
GGCTTTATGGAAACAAAAAAACGCAGCAAAGCCTTCCGTGACTTCTTAGATAAAGCAGCACTCAAAGCCCCTATTTTTGG
TGATTTAGTTTATAAGGCGATTATCGCTCGTTATAGCCGTACATTAGCGACTACTTTTGCTGCAGGTGTACCACTCATTG
ATGCGCTGGAATCTACAGCAGGTGCAACTAACAATGTCGTATACGAGACTGCAGTCATGAAAATTCGTGAAGATGTCGCA
ACTGGCCAACAACTTCAATTTGCCATGCGTGTTACGGATAAATTTCCATCAATGGCCATTCAAATGGTCGCAATTGGTGA
GGAATCTGGTGCTCTCGATGCTATGCTCGATAAAGTTGCAACGCATTATGAAAATGAAGTAGATAACGCCGTTGATGGTC
TTACATCAATGATGGAACCATTAATTATGGCGGTACTCGGTGTGCTTGTTGGTGGCCTTGTGATTGCAATGTATCTTCCA
ATCTTCCAAATGGGTTCTGTGGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

90.441

100

0.904
  pilC Acinetobacter baylyi ADP1

84.314

100

0.843
  pilC Pseudomonas stutzeri DSM 10701

61.235

99.265

0.608
  pilC Legionella pneumophila strain ERS1305867

53.333

99.265

0.529
  pilG Neisseria gonorrhoeae MS11

45.865

97.794

0.449
  pilG Neisseria meningitidis 44/76-A

45.614

97.794

0.446
  pilC Vibrio cholerae strain A1552

42.402

100

0.424
  pilC Vibrio campbellii strain DS40M4

40.049

99.755

0.4

Multiple sequence alignment