Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   ACLKMZ_RS01570 Genome accession   NZ_CP183909
Coordinates   338123..338983 (-) Length   286 a.a.
NCBI ID   WP_180056207.1    Uniprot ID   -
Organism   Acinetobacter gandensis strain M1_NDM_tet(X3)     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 333123..343983
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLKMZ_RS01550 - 335303..335626 (+) 324 WP_067763086.1 pyrimidine/purine nucleoside phosphorylase -
  ACLKMZ_RS01555 rlmB 335802..336551 (+) 750 WP_067763084.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  ACLKMZ_RS01560 - 336575..337495 (+) 921 WP_180056205.1 DMT family transporter -
  ACLKMZ_RS01565 coaE 337511..338113 (-) 603 WP_180056206.1 dephospho-CoA kinase -
  ACLKMZ_RS01570 pilD 338123..338983 (-) 861 WP_180056207.1 prepilin peptidase Machinery gene
  ACLKMZ_RS01575 pilC 338983..340209 (-) 1227 WP_180056208.1 type II secretion system F family protein Machinery gene
  ACLKMZ_RS01580 pilB 340242..341952 (-) 1711 Protein_302 type IV-A pilus assembly ATPase PilB -
  ACLKMZ_RS01585 tpiA 342228..343019 (+) 792 WP_411691567.1 triose-phosphate isomerase -
  ACLKMZ_RS01590 secG 343033..343362 (+) 330 WP_067763070.1 preprotein translocase subunit SecG -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32082.39 Da        Isoelectric Point: 7.5027

>NTDB_id=1107154 ACLKMZ_RS01570 WP_180056207.1 338123..338983(-) (pilD) [Acinetobacter gandensis strain M1_NDM_tet(X3)]
MQELITYLINTPIALYIAVGLFSLCIGSFLNVVIYRTPKMMEQEWRTDCQLFLHPEQPIIDENKITLSKPNSTCPKCQTP
IHWYQNIPVISWLVLRGKCGDCHNPISIRYPLIELLTAICGITVVAVFGPTLQMLFGLVLTYVLIALTFIDFDTQLLPDR
YTLPLAALGLGINSYAIYTSPTSSIWGYIIGFLCLWIVYYLFKIITGKEGMGYGDFKLLAALGAWMGPFLLPLIVLLSSL
VGAIIGIILLKVRKENQPFAFGPYIAIAGWIAFLWGDQIMKIYLGQ

Nucleotide


Download         Length: 861 bp        

>NTDB_id=1107154 ACLKMZ_RS01570 WP_180056207.1 338123..338983(-) (pilD) [Acinetobacter gandensis strain M1_NDM_tet(X3)]
ATGCAAGAATTAATAACTTACCTCATCAACACCCCAATTGCGCTGTATATCGCGGTTGGGCTTTTTAGTCTTTGTATTGG
TAGTTTCCTCAATGTAGTGATCTACCGTACACCTAAAATGATGGAACAAGAGTGGCGTACTGATTGCCAACTTTTCCTTC
ACCCAGAACAACCAATCATTGATGAAAATAAAATCACGCTAAGTAAGCCCAATTCGACTTGTCCAAAATGTCAGACACCG
ATTCATTGGTATCAAAATATTCCTGTCATTAGTTGGCTCGTCCTTCGTGGAAAATGCGGTGATTGTCATAATCCAATTAG
CATCCGCTATCCACTCATTGAGTTATTAACAGCCATTTGTGGTATCACTGTTGTCGCTGTATTTGGACCAACCTTACAGA
TGTTATTTGGTCTAGTATTAACGTATGTTCTAATTGCACTCACATTTATCGATTTTGACACTCAATTACTCCCTGACCGT
TATACACTACCACTTGCTGCACTCGGTTTAGGTATTAATAGCTACGCAATCTATACCTCTCCAACTTCATCAATTTGGGG
CTATATTATTGGCTTTTTATGTCTTTGGATTGTTTACTACCTGTTTAAAATTATTACTGGTAAAGAAGGCATGGGCTACG
GTGATTTTAAGTTGCTAGCAGCTCTTGGGGCATGGATGGGACCGTTTTTACTTCCACTGATTGTCTTGCTCTCCTCGCTT
GTTGGTGCCATTATCGGGATCATTCTCTTGAAAGTCCGTAAAGAAAATCAGCCATTCGCCTTTGGCCCCTATATTGCCAT
TGCGGGTTGGATTGCTTTTCTTTGGGGTGATCAAATTATGAAAATCTATTTAGGCCAATAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(138-247)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter baumannii D1279779

81.053

99.65

0.808
  pilD Acinetobacter nosocomialis M2

80.702

99.65

0.804
  pilD Vibrio cholerae strain A1552

55.431

93.357

0.517
  pilD Vibrio campbellii strain DS40M4

53.903

94.056

0.507
  pilD Neisseria gonorrhoeae MS11

46.886

95.455

0.448

Multiple sequence alignment