Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   ACN6MY_RS00625 Genome accession   NZ_CP183879
Coordinates   152528..152890 (-) Length   120 a.a.
NCBI ID   WP_419882370.1    Uniprot ID   -
Organism   Peribacillus sp. B-H-3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 147528..157890
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN6MY_RS00605 (ACN6MY_00605) - 148159..149745 (-) 1587 WP_419882367.1 ABC transporter substrate-binding protein -
  ACN6MY_RS00610 (ACN6MY_00610) - 149798..150766 (-) 969 WP_090988636.1 ABC transporter ATP-binding protein -
  ACN6MY_RS00615 (ACN6MY_00615) - 150747..151751 (-) 1005 WP_419882368.1 ABC transporter ATP-binding protein -
  ACN6MY_RS00620 (ACN6MY_00620) - 152135..152503 (-) 369 WP_419882369.1 hypothetical protein -
  ACN6MY_RS00625 (ACN6MY_00625) ssbB 152528..152890 (-) 363 WP_419882370.1 single-stranded DNA-binding protein Machinery gene
  ACN6MY_RS00630 (ACN6MY_00630) - 153170..153604 (+) 435 WP_419882371.1 YwpF family protein -
  ACN6MY_RS00635 (ACN6MY_00635) fabZ 153979..154410 (-) 432 WP_419882372.1 3-hydroxyacyl-ACP dehydratase FabZ -
  ACN6MY_RS00640 (ACN6MY_00640) - 154508..154768 (-) 261 WP_419882373.1 DNA-directed RNA polymerase subunit beta -
  ACN6MY_RS00645 (ACN6MY_00645) - 154811..155653 (-) 843 WP_419882374.1 flagellar hook-basal body protein -
  ACN6MY_RS00650 (ACN6MY_00650) - 155726..156565 (-) 840 WP_419882375.1 flagellar hook-basal body protein -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13558.28 Da        Isoelectric Point: 8.9727

>NTDB_id=1106605 ACN6MY_RS00625 WP_419882370.1 152528..152890(-) (ssbB) [Peribacillus sp. B-H-3]
MINQVTLVGRITRDPELRYTPEGTAVSNVTLAVNRNFRNGDGEYTADFVQCTLWKKTAENTVQYCRKGSIVGIVGRIQTR
SYENQDGKKVYVTDVVAETVRFVGTKQAENAKQEYEAIKF

Nucleotide


Download         Length: 363 bp        

>NTDB_id=1106605 ACN6MY_RS00625 WP_419882370.1 152528..152890(-) (ssbB) [Peribacillus sp. B-H-3]
TTGATTAATCAAGTTACGCTGGTAGGAAGGATTACCCGTGATCCTGAGCTGAGATATACACCTGAAGGTACAGCAGTTTC
TAATGTGACGCTTGCTGTAAACCGGAATTTCCGGAATGGAGATGGTGAGTATACAGCAGATTTTGTACAGTGTACGCTAT
GGAAAAAAACAGCTGAAAACACGGTCCAGTACTGCCGGAAAGGTTCTATAGTCGGAATCGTCGGGAGAATCCAAACGCGC
AGCTATGAAAATCAGGATGGAAAAAAAGTCTACGTTACAGATGTTGTGGCAGAAACCGTGCGCTTTGTCGGTACAAAGCA
GGCTGAAAATGCCAAGCAGGAATATGAAGCAATCAAGTTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

65.766

92.5

0.608
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.604

88.333

0.5
  ssb Latilactobacillus sakei subsp. sakei 23K

47.154

100

0.483
  ssbB Streptococcus sobrinus strain NIDR 6715-7

44.737

95

0.425
  ssbA Streptococcus mutans UA159

41.228

95

0.392
  ssbB/cilA Streptococcus mitis NCTC 12261

37.607

97.5

0.367
  ssb Neisseria meningitidis MC58

37.607

97.5

0.367
  ssbB/cilA Streptococcus pneumoniae TIGR4

37.607

97.5

0.367

Multiple sequence alignment