Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ACN6MX_RS19780 Genome accession   NZ_CP183878
Coordinates   4014242..4014745 (-) Length   167 a.a.
NCBI ID   WP_419960475.1    Uniprot ID   -
Organism   Psychrobacillus sp. BM2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4009242..4019745
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN6MX_RS19760 (ACN6MX_19760) rplI 4010303..4010752 (-) 450 WP_419960472.1 50S ribosomal protein L9 -
  ACN6MX_RS19765 (ACN6MX_19765) - 4010749..4012725 (-) 1977 WP_419960473.1 DHH family phosphoesterase -
  ACN6MX_RS19770 (ACN6MX_19770) - 4012738..4013679 (-) 942 WP_419960474.1 YybS family protein -
  ACN6MX_RS19775 (ACN6MX_19775) rpsR 4013957..4014196 (-) 240 WP_419962672.1 30S ribosomal protein S18 -
  ACN6MX_RS19780 (ACN6MX_19780) ssbA 4014242..4014745 (-) 504 WP_419960475.1 single-stranded DNA-binding protein Machinery gene
  ACN6MX_RS19785 (ACN6MX_19785) rpsF 4014785..4015093 (-) 309 WP_093062319.1 30S ribosomal protein S6 -
  ACN6MX_RS19790 (ACN6MX_19790) - 4015261..4015821 (+) 561 WP_419960476.1 DUF3267 domain-containing protein -
  ACN6MX_RS19795 (ACN6MX_19795) ychF 4016397..4017497 (-) 1101 WP_419960477.1 redox-regulated ATPase YchF -
  ACN6MX_RS19800 (ACN6MX_19800) - 4017854..4018054 (-) 201 WP_340776698.1 DUF951 domain-containing protein -
  ACN6MX_RS19805 (ACN6MX_19805) - 4018097..4018930 (-) 834 WP_419960478.1 mechanosensitive ion channel family protein -
  ACN6MX_RS19810 (ACN6MX_19810) yyaC 4018993..4019595 (+) 603 WP_419960479.1 spore protease YyaC -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18495.20 Da        Isoelectric Point: 4.7719

>NTDB_id=1106595 ACN6MX_RS19780 WP_419960475.1 4014242..4014745(-) (ssbA) [Psychrobacillus sp. BM2]
MINRVVLVGRLTKDPELRYTPSGVAMARFTIAVNRTFSNQQGEREADFINCVVWRKQAENTANYLKKGSLAGVEGRIQTG
SYEGQDGKRVYTTDVVADSVQFLEPRNSSGERSQGGQSSGGNGQQQFSTPSYQQNQPMNQQNYTRVDEDPFSNSSGPIEV
SDDDLPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=1106595 ACN6MX_RS19780 WP_419960475.1 4014242..4014745(-) (ssbA) [Psychrobacillus sp. BM2]
ATGATTAACCGTGTCGTATTAGTTGGAAGACTAACAAAAGATCCGGAACTTCGCTATACACCAAGTGGTGTTGCAATGGC
TAGATTTACAATAGCTGTAAATCGTACATTCTCCAACCAACAAGGTGAAAGAGAAGCTGATTTTATCAACTGTGTCGTTT
GGAGAAAGCAAGCTGAAAACACAGCGAACTACCTGAAAAAAGGAAGTTTAGCTGGTGTTGAAGGACGCATTCAAACGGGT
AGTTATGAAGGACAAGATGGAAAACGTGTTTATACGACAGACGTTGTCGCAGACAGCGTTCAGTTCTTAGAACCACGTAA
TAGCTCTGGAGAGCGCAGCCAAGGTGGACAATCATCTGGTGGCAATGGACAGCAGCAATTTTCAACACCTTCATATCAGC
AAAACCAACCAATGAATCAGCAAAATTATACACGTGTAGATGAGGATCCTTTTTCTAATAGTAGCGGACCAATCGAAGTA
TCGGATGACGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

60.345

100

0.629
  ssb Latilactobacillus sakei subsp. sakei 23K

55.172

100

0.575
  ssbB Bacillus subtilis subsp. subtilis str. 168

62.264

63.473

0.395
  ssb Neisseria meningitidis MC58

36.932

100

0.389
  ssb Neisseria gonorrhoeae MS11

36.932

100

0.389
  ssb Glaesserella parasuis strain SC1401

34.27

100

0.365
  ssb Vibrio cholerae strain A1552

33.889

100

0.365

Multiple sequence alignment