Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   ACAM27_RS16810 Genome accession   NZ_AP031605
Coordinates   3705004..3707106 (-) Length   700 a.a.
NCBI ID   WP_369612339.1    Uniprot ID   -
Organism   Marinobacter sp. RI1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3700004..3712106
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACAM27_RS16795 (MspRI1_33290) - 3701543..3703180 (-) 1638 WP_369612337.1 AAA family ATPase -
  ACAM27_RS16800 (MspRI1_33300) aroB 3703212..3704309 (-) 1098 WP_369612338.1 3-dehydroquinate synthase -
  ACAM27_RS16805 (MspRI1_33310) aroK 3704278..3704868 (-) 591 WP_023010980.1 shikimate kinase AroK -
  ACAM27_RS16810 (MspRI1_33320) pilQ 3705004..3707106 (-) 2103 WP_369612339.1 type IV pilus secretin PilQ Machinery gene
  ACAM27_RS16815 (MspRI1_33330) - 3707121..3707663 (-) 543 WP_153741467.1 pilus assembly protein PilP -
  ACAM27_RS16820 (MspRI1_33340) - 3707666..3708277 (-) 612 WP_224851272.1 type 4a pilus biogenesis protein PilO -
  ACAM27_RS16825 (MspRI1_33350) - 3708277..3708840 (-) 564 WP_011784346.1 PilN domain-containing protein -
  ACAM27_RS16830 (MspRI1_33360) pilM 3708840..3709904 (-) 1065 WP_011784345.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 700 a.a.        Molecular weight: 75670.20 Da        Isoelectric Point: 4.4272

>NTDB_id=110620 ACAM27_RS16810 WP_369612339.1 3705004..3707106(-) (pilQ) [Marinobacter sp. RI1]
MNSRNMHEQTGLGSRLAMFKKLNVCVGVIAIGLWSGLASAVTLQDLSFSSLPGERLEVTMQFDGTPPEPSGYTIERPARI
AVDLKDTTSALNQRSIPLGTGNAQSVTVVETKDRTRLIFNLVELVPHDTVRTNNSLVMTIGGESDVVSATSQPAQRTTTT
SSASSNSLAGVDFRRGNEGEGRVIVDLGSNAATVNLNELGGRIRLTMPNLQVPADLRRRLDVTDFATPVTRIDTYVEDGS
AVVEIRPEGDYDYIAYQSGREFTVSVEALTQEEAEARREEKFPYTGEKLSLNFQDIEVRSVLQLIADFTGLNLVASDTVG
GSITLRLQNVPWDQALDLILKTKGLDKRQIGNVLLVAPAEEIAAREKLELETNKQIAELAPVRLDIIQVNYAKAADVVAL
IQADAELISSRGFVSSDARTNTISVRETAEKLEEIRRLVATWDVPVRQVSIEARIVRAQNNVSEELGVKWGFEGRGSADG
GTDTIVVGGSQGATALIPNSGPLSLPSDLNVDLGVTRAGSSSVAFGYIGTDFLLDLELSAFESDGRAEVVSQPRVVTADR
QTASIKSGEEIPYQEATSSGATNVEFKEAVLSLEVTPQITPDDKIIMDLVVNQDSRGEVTAGIPSINTNEVTTQVLVANG
ETVVLGGIFQSEVATQTTKTPFLGDIPYLGRLFKRTEHVDERSELLIFITPKIIKNDILQ

Nucleotide


Download         Length: 2103 bp        

>NTDB_id=110620 ACAM27_RS16810 WP_369612339.1 3705004..3707106(-) (pilQ) [Marinobacter sp. RI1]
ATGAATTCAAGAAACATGCACGAACAAACAGGTTTAGGGTCGAGGCTAGCGATGTTCAAAAAACTCAATGTCTGCGTAGG
CGTGATTGCCATCGGGTTATGGAGCGGCCTGGCCAGCGCGGTCACGCTGCAGGACTTGTCGTTTTCTTCGCTGCCGGGGG
AGCGGCTGGAAGTCACCATGCAGTTTGATGGCACGCCGCCGGAACCGTCGGGCTATACCATAGAGCGACCTGCCCGGATT
GCGGTAGATCTCAAGGACACCACCAGTGCCCTGAATCAGCGCAGCATTCCGCTGGGTACAGGTAATGCTCAGAGCGTCAC
CGTGGTCGAAACCAAGGATCGCACCCGCTTAATCTTTAATCTGGTTGAATTGGTGCCTCACGATACCGTCCGCACCAATA
ACTCACTGGTAATGACGATTGGTGGTGAGTCTGATGTCGTTTCGGCTACGTCGCAACCTGCCCAGAGAACGACAACGACC
TCGTCAGCGTCGTCGAATTCGTTGGCCGGCGTCGATTTCCGTCGTGGTAACGAGGGTGAAGGTCGCGTCATCGTTGATCT
CGGTAGTAACGCCGCGACCGTTAACCTGAATGAGTTGGGCGGCCGGATCCGCTTGACCATGCCGAATCTTCAGGTTCCTG
CGGATTTGCGCCGCCGCCTGGATGTAACGGATTTTGCTACTCCGGTTACGCGCATCGATACGTATGTAGAGGATGGAAGT
GCGGTAGTTGAAATTCGGCCGGAGGGCGACTACGACTATATCGCTTATCAGTCTGGTCGCGAATTCACCGTGAGTGTTGA
AGCGCTGACTCAGGAGGAAGCCGAAGCTCGCCGAGAGGAGAAGTTCCCGTATACCGGCGAGAAGCTCTCCCTGAACTTCC
AGGATATTGAAGTTCGCTCTGTCCTGCAGCTGATTGCTGATTTCACCGGTCTTAACCTGGTTGCCAGTGATACAGTGGGA
GGCAGTATCACTCTGCGCCTGCAGAATGTGCCTTGGGACCAGGCGCTGGATCTGATCCTCAAGACCAAAGGTTTGGACAA
ACGCCAGATTGGCAACGTCCTGCTGGTTGCGCCTGCTGAAGAAATTGCGGCACGTGAAAAGCTTGAGCTTGAAACCAATA
AGCAGATTGCTGAATTAGCGCCGGTGCGCCTGGACATTATTCAGGTGAATTACGCCAAGGCGGCCGACGTCGTTGCTCTG
ATTCAGGCAGATGCAGAGTTGATTTCCTCCCGTGGCTTTGTTTCATCTGATGCCAGGACGAATACCATCAGCGTTCGTGA
GACGGCAGAGAAGCTTGAGGAAATCCGTCGGCTGGTCGCGACTTGGGACGTTCCCGTGCGTCAGGTGTCCATAGAGGCGC
GTATCGTTCGAGCTCAAAACAATGTCTCGGAAGAGTTGGGCGTGAAGTGGGGGTTTGAAGGGCGAGGCTCTGCCGACGGT
GGTACCGATACTATTGTGGTTGGAGGATCGCAGGGGGCTACCGCATTGATTCCCAATTCGGGTCCTCTGTCGCTACCTTC
TGACCTGAACGTTGACCTGGGCGTTACCCGCGCGGGGTCGTCTTCGGTTGCTTTCGGTTATATCGGAACGGACTTTTTGC
TTGATCTTGAGTTGTCGGCTTTTGAAAGTGACGGCCGCGCAGAGGTGGTGTCTCAGCCTCGCGTCGTAACCGCTGATCGC
CAGACGGCATCTATCAAGTCTGGTGAAGAGATCCCATATCAGGAGGCCACCTCAAGTGGTGCAACGAACGTTGAGTTCAA
GGAAGCAGTCCTTTCACTCGAGGTTACTCCCCAGATCACGCCCGATGATAAGATCATTATGGACCTTGTTGTTAATCAGG
ATTCCCGGGGTGAAGTGACGGCAGGCATCCCCTCTATCAACACTAACGAGGTTACAACTCAGGTATTGGTTGCTAATGGT
GAAACTGTGGTTCTGGGCGGTATCTTCCAGTCAGAAGTGGCTACCCAAACCACCAAAACACCGTTCTTGGGTGATATCCC
ATACCTCGGTCGACTGTTCAAGCGCACCGAACACGTCGATGAGCGCAGTGAATTGTTGATTTTTATCACTCCAAAGATCA
TCAAGAACGACATACTGCAGTAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(540-695)

Secretin and TonB N terminus short domain (STN)

(312-358)

Bacterial type II/III secretion system short domain (Secretin_N)

(386-448)

AMIN domain (AMIN)

(56-137)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

47.955

100

0.486
  comQ Acinetobacter baylyi ADP1

40.96

100

0.414
  pilQ Acinetobacter baumannii D1279779

39.724

100

0.411
  pilQ Acinetobacter baumannii strain A118

39.724

100

0.411
  pilQ Legionella pneumophila strain Lp02

41.212

94.286

0.389
  pilQ Legionella pneumophila strain ERS1305867

41.212

94.286

0.389

Multiple sequence alignment