Detailed information
Bioinformatically predicted
Overview
| Name | comGC | Type | Machinery gene |
| Locus tag | ACM592_RS07975 | Genome accession | NZ_CP183792 |
| Coordinates | 1694064..1694381 (+) | Length | 105 a.a. |
| NCBI ID | WP_029377192.1 | Uniprot ID | - |
| Organism | Staphylococcus sp. Ze3 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1689064..1699381
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACM592_RS07945 (ACM592_07945) | - | 1689419..1689616 (+) | 198 | WP_029377186.1 | YqgQ family protein | - |
| ACM592_RS07950 (ACM592_07950) | - | 1689998..1690984 (+) | 987 | WP_029377187.1 | glucokinase | - |
| ACM592_RS07955 (ACM592_07955) | - | 1690984..1691307 (+) | 324 | WP_029377188.1 | MTH1187 family thiamine-binding protein | - |
| ACM592_RS07960 (ACM592_07960) | - | 1691309..1691932 (+) | 624 | WP_029377189.1 | MBL fold metallo-hydrolase | - |
| ACM592_RS07965 (ACM592_07965) | comGA | 1692031..1693005 (+) | 975 | WP_029377190.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| ACM592_RS07970 (ACM592_07970) | comGB | 1692977..1694044 (+) | 1068 | WP_051664335.1 | competence type IV pilus assembly protein ComGB | - |
| ACM592_RS07975 (ACM592_07975) | comGC | 1694064..1694381 (+) | 318 | WP_029377192.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| ACM592_RS07980 (ACM592_07980) | comGD | 1694362..1694805 (+) | 444 | WP_418354363.1 | competence type IV pilus minor pilin ComGD | - |
| ACM592_RS07985 (ACM592_07985) | - | 1694792..1695091 (+) | 300 | WP_326026743.1 | hypothetical protein | - |
| ACM592_RS07990 (ACM592_07990) | comGF | 1695063..1695506 (+) | 444 | WP_029377195.1 | competence type IV pilus minor pilin ComGF | - |
| ACM592_RS07995 (ACM592_07995) | - | 1695686..1696186 (+) | 501 | WP_037557022.1 | shikimate kinase | - |
| ACM592_RS08000 (ACM592_08000) | gcvT | 1696373..1697464 (+) | 1092 | WP_326026742.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| ACM592_RS08005 (ACM592_08005) | gcvPA | 1697482..1698834 (+) | 1353 | WP_038678548.1 | aminomethyl-transferring glycine dehydrogenase subunit GcvPA | - |
Sequence
Protein
Download Length: 105 a.a. Molecular weight: 11788.86 Da Isoelectric Point: 8.4952
>NTDB_id=1106089 ACM592_RS07975 WP_029377192.1 1694064..1694381(+) (comGC) [Staphylococcus sp. Ze3]
MNNFKNKFNKKAFTLIEMLLVLLIISLLLILIIPNIAKQSSHIQTTSCEAQLKMVDSQIEAYSLKFNKKPTTMDELVNEG
YIKENQKQCKSGALISINDGEAVAN
MNNFKNKFNKKAFTLIEMLLVLLIISLLLILIIPNIAKQSSHIQTTSCEAQLKMVDSQIEAYSLKFNKKPTTMDELVNEG
YIKENQKQCKSGALISINDGEAVAN
Nucleotide
Download Length: 318 bp
>NTDB_id=1106089 ACM592_RS07975 WP_029377192.1 1694064..1694381(+) (comGC) [Staphylococcus sp. Ze3]
ATGAATAATTTTAAAAATAAGTTTAACAAAAAGGCATTTACACTCATTGAAATGCTATTGGTTTTATTAATAATAAGTTT
GTTATTAATACTAATAATACCTAATATAGCTAAACAATCCTCACACATACAAACAACTAGTTGTGAAGCGCAACTCAAAA
TGGTAGATAGTCAAATTGAAGCTTATAGTTTGAAGTTCAATAAGAAGCCAACTACTATGGACGAACTCGTCAACGAAGGT
TATATCAAAGAGAACCAAAAACAATGTAAGTCAGGCGCCTTAATATCGATAAATGATGGTGAAGCAGTTGCAAATTAG
ATGAATAATTTTAAAAATAAGTTTAACAAAAAGGCATTTACACTCATTGAAATGCTATTGGTTTTATTAATAATAAGTTT
GTTATTAATACTAATAATACCTAATATAGCTAAACAATCCTCACACATACAAACAACTAGTTGTGAAGCGCAACTCAAAA
TGGTAGATAGTCAAATTGAAGCTTATAGTTTGAAGTTCAATAAGAAGCCAACTACTATGGACGAACTCGTCAACGAAGGT
TATATCAAAGAGAACCAAAAACAATGTAAGTCAGGCGCCTTAATATCGATAAATGATGGTGAAGCAGTTGCAAATTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGC | Staphylococcus aureus N315 |
70.297 |
96.19 |
0.676 |
| comGC | Staphylococcus aureus MW2 |
70.297 |
96.19 |
0.676 |
| comYC | Streptococcus gordonii str. Challis substr. CH1 |
46.296 |
100 |
0.476 |
| comGC/cglC | Streptococcus pneumoniae D39 |
39.623 |
100 |
0.4 |
| comGC/cglC | Streptococcus pneumoniae R6 |
39.623 |
100 |
0.4 |
| comGC/cglC | Streptococcus pneumoniae TIGR4 |
39.623 |
100 |
0.4 |
| comGC/cglC | Streptococcus pneumoniae Rx1 |
39.623 |
100 |
0.4 |
| comGC/cglC | Streptococcus mitis NCTC 12261 |
40 |
100 |
0.4 |
| comGC/cglC | Streptococcus mitis SK321 |
41.667 |
91.429 |
0.381 |
| comGC | Bacillus subtilis subsp. subtilis str. 168 |
41.489 |
89.524 |
0.371 |
| comYC | Streptococcus mutans UA140 |
49.351 |
73.333 |
0.362 |
| comYC | Streptococcus mutans UA159 |
49.351 |
73.333 |
0.362 |