Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   V3C22_RS09435 Genome accession   NZ_CP183775
Coordinates   1915092..1916348 (-) Length   418 a.a.
NCBI ID   WP_002266115.1    Uniprot ID   -
Organism   Streptococcus mutans strain Xc     
Function   require for competence (predicted from homology)   
Unclear

Genomic Context

Location: 1910092..1921348
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V3C22_RS09390 (V3C22_09390) - 1910283..1910582 (-) 300 WP_002262384.1 DUF1292 domain-containing protein -
  V3C22_RS09395 (V3C22_09395) ruvX 1910663..1911082 (-) 420 WP_002270746.1 Holliday junction resolvase RuvX -
  V3C22_RS09400 (V3C22_09400) - 1911079..1911348 (-) 270 WP_002262386.1 IreB family regulatory phosphoprotein -
  V3C22_RS09405 (V3C22_09405) brsR 1911516..1911950 (+) 435 WP_002277469.1 bacteriocin genes transcriptional regulator BrsR Regulator
  V3C22_RS09410 (V3C22_09410) brsM 1911963..1912409 (+) 447 WP_014678281.1 bacteriocin genes regulator BrsM Regulator
  V3C22_RS09415 (V3C22_09415) - 1912400..1912600 (-) 201 Protein_1801 hypothetical protein -
  V3C22_RS09420 (V3C22_09420) - 1912741..1913166 (-) 426 WP_002266116.1 hypothetical protein -
  V3C22_RS09425 (V3C22_09425) spx 1913418..1913816 (-) 399 WP_002262391.1 transcriptional regulator Spx -
  V3C22_RS09430 (V3C22_09430) recA 1913901..1915052 (-) 1152 WP_002262392.1 recombinase RecA Machinery gene
  V3C22_RS09435 (V3C22_09435) cinA 1915092..1916348 (-) 1257 WP_002266115.1 competence/damage-inducible protein A Machinery gene
  V3C22_RS09440 (V3C22_09440) - 1916497..1917008 (-) 512 Protein_1806 DNA-3-methyladenine glycosylase I -
  V3C22_RS09445 (V3C22_09445) ruvA 1917090..1917683 (-) 594 WP_002266975.1 Holliday junction branch migration protein RuvA -
  V3C22_RS09450 (V3C22_09450) mutL 1917865..1919820 (-) 1956 WP_226707231.1 DNA mismatch repair endonuclease MutL -
  V3C22_RS09455 (V3C22_09455) - 1920045..1920324 (+) 280 Protein_1809 transposase -

Sequence

Protein


Download         Length: 418 a.a.        Molecular weight: 45718.51 Da        Isoelectric Point: 6.2714

>NTDB_id=1105986 V3C22_RS09435 WP_002266115.1 1915092..1916348(-) (cinA) [Streptococcus mutans strain Xc]
MKSEIIAVGTEILTGQIVNTNSQFLSEKFAELGIDVYFQTAVGDNEERLLSVLKIAKERSDLIVLCGGLGPTEDDLTKQT
LAKFLKRELVFDKTAQERLDEFFASRPTSMRTPNNECQAQIIAGSQPLSNKTGLAVGGLLEADGVTYVVLPGPPSELKPM
VNKELLPYLSKTSEKLYSRVLRFFGIGESHLVTLLHDLIAEQTDPTIAPYAKTGEVTIRLSTKAHRQKEADSKLDKLEKK
IITIDNLADYFYGYGEENSLPQVVFDLLKEKGKTITAAESLTAGLFQARLADFAGASDIFKGGFITYSIEEKARMLGIPF
EDLQLHGVVSAFTAEKMAERSRQLTQADLAVSLTGVAGPDSLEGQPAGTVFIGLSSSKRTMAIKVLIGGRSRSDVRYIAV
LHAFNLVRQTLLSHKNLV

Nucleotide


Download         Length: 1257 bp        

>NTDB_id=1105986 V3C22_RS09435 WP_002266115.1 1915092..1916348(-) (cinA) [Streptococcus mutans strain Xc]
ATGAAATCTGAGATCATTGCTGTTGGAACAGAAATTTTAACAGGACAAATTGTTAATACTAATAGTCAATTTTTATCAGA
AAAATTCGCAGAATTAGGAATTGATGTTTATTTTCAAACAGCAGTTGGTGATAATGAAGAACGCCTTTTATCTGTTTTGA
AAATTGCAAAGGAACGTAGTGATTTAATCGTACTTTGTGGTGGTTTGGGACCAACAGAAGATGATTTAACAAAACAAACC
CTAGCAAAATTTTTGAAAAGAGAATTGGTATTTGATAAAACAGCTCAAGAACGTCTAGATGAATTTTTTGCATCACGTCC
AACATCTATGCGCACACCAAATAATGAATGTCAGGCGCAGATTATAGCAGGAAGTCAGCCTTTATCTAATAAAACAGGCT
TAGCAGTTGGGGGGCTTTTGGAGGCAGATGGAGTGACTTATGTTGTATTACCTGGTCCGCCTAGCGAATTGAAGCCTATG
GTTAACAAAGAGTTACTCCCTTATTTATCAAAAACTTCTGAGAAGCTTTATTCTCGTGTGTTACGCTTTTTTGGTATTGG
TGAGAGTCATCTAGTGACCTTGTTGCATGACTTAATAGCGGAGCAAACAGATCCCACAATTGCTCCTTATGCTAAGACAG
GCGAGGTAACAATACGTTTATCAACAAAAGCCCATAGGCAGAAAGAAGCAGATAGTAAGTTAGATAAGTTGGAAAAGAAA
ATTATAACTATTGATAACTTGGCTGATTATTTTTATGGTTATGGTGAAGAAAATTCATTACCACAGGTTGTATTTGATCT
GCTTAAGGAAAAGGGTAAAACGATTACAGCAGCTGAAAGTTTAACAGCAGGCCTTTTTCAGGCAAGATTAGCAGATTTTG
CAGGAGCATCTGATATCTTTAAGGGAGGTTTTATAACTTACAGTATAGAAGAGAAGGCTAGAATGCTAGGTATTCCCTTT
GAAGATCTCCAACTTCATGGGGTTGTTAGTGCTTTTACTGCTGAAAAGATGGCAGAGCGCTCCCGCCAGCTGACTCAAGC
AGATTTAGCTGTTTCTTTAACAGGAGTTGCAGGTCCGGATAGCTTAGAAGGTCAGCCGGCAGGGACAGTTTTTATCGGTT
TGTCAAGTTCCAAAAGAACAATGGCAATCAAAGTGTTAATTGGCGGACGCAGTCGGTCTGATGTGCGTTATATCGCTGTT
TTACATGCTTTTAATTTAGTACGTCAAACTTTATTATCTCATAAAAATTTAGTATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(178-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-170)

Competence-damaged protein (CinA)

(259-411)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mutans UA159

99.761

100

0.998
  cinA Streptococcus mitis SK321

72.249

100

0.722
  cinA Streptococcus mitis NCTC 12261

71.77

100

0.718
  cinA Streptococcus pneumoniae TIGR4

70.574

100

0.706
  cinA Streptococcus pneumoniae Rx1

70.335

100

0.703
  cinA Streptococcus pneumoniae R6

70.335

100

0.703
  cinA Streptococcus pneumoniae D39

70.096

100

0.701
  cinA Streptococcus suis isolate S10

55.474

98.325

0.545
  cinA Bacillus subtilis subsp. subtilis str. 168

45.763

98.804

0.452

Multiple sequence alignment