Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | ACN3VN_RS10800 | Genome accession | NZ_CP183396 |
| Coordinates | 2342174..2343376 (-) | Length | 400 a.a. |
| NCBI ID | WP_011098309.1 | Uniprot ID | - |
| Organism | Xylella fastidiosa strain CFBP8074 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2337174..2348376
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACN3VN_RS10780 (ACN3VN_10780) | - | 2338395..2339072 (+) | 678 | WP_010894955.1 | response regulator transcription factor | - |
| ACN3VN_RS10785 (ACN3VN_10785) | - | 2339065..2340402 (+) | 1338 | WP_023908103.1 | sensor histidine kinase | - |
| ACN3VN_RS10790 (ACN3VN_10790) | coaE | 2340669..2341292 (-) | 624 | WP_046418843.1 | dephospho-CoA kinase | - |
| ACN3VN_RS10795 (ACN3VN_10795) | - | 2341304..2342167 (-) | 864 | WP_058569265.1 | prepilin peptidase | - |
| ACN3VN_RS10800 (ACN3VN_10800) | pilC | 2342174..2343376 (-) | 1203 | WP_011098309.1 | type II secretion system F family protein | Machinery gene |
| ACN3VN_RS10805 (ACN3VN_10805) | - | 2343817..2344266 (+) | 450 | WP_058569266.1 | pilin | - |
| ACN3VN_RS10810 (ACN3VN_10810) | - | 2344531..2344734 (-) | 204 | WP_419653900.1 | hypothetical protein | - |
| ACN3VN_RS10815 (ACN3VN_10815) | - | 2345239..2345367 (-) | 129 | WP_267885865.1 | hypothetical protein | - |
| ACN3VN_RS10820 (ACN3VN_10820) | - | 2345568..2346008 (+) | 441 | WP_058569267.1 | pilin | - |
Sequence
Protein
Download Length: 400 a.a. Molecular weight: 44098.02 Da Isoelectric Point: 10.1299
>NTDB_id=1105522 ACN3VN_RS10800 WP_011098309.1 2342174..2343376(-) (pilC) [Xylella fastidiosa strain CFBP8074]
MTSFLWEGTDKRGVKIKGEQTARTANLLRAELRRQGITPLVVKPRPKPLFGQAGKRITPKDIAFFSRQMATMMKAGVPIV
GALDILANGQKNPRMRTMVNQIKNDIEGGSSLYESISKHPVYFDELYRNLVRAGERAGVLETVLDTVASYKENIEALKGK
IRKALFYPVAIVAVALIVSSILLIYVVPQFEDVFKGFGAELPAFTQMIVNFSNFMQRWWWAMLALLIVVIGGGLFTYKRS
ESMQHLLDRLVLKFPVIGAIMHNSALARFSRTTAVTFRAGVPLVEALGIVAGATGNKVYSDAVFRMRDDVSVGYSINMSM
RQVGIFPHMVVQMASIGEEAGALDAMLFKVAEYYEQEVSNAVDGLSSLLEPLIMVFIGVIVGGMVIAMYLPIFKLASVVG
MTSFLWEGTDKRGVKIKGEQTARTANLLRAELRRQGITPLVVKPRPKPLFGQAGKRITPKDIAFFSRQMATMMKAGVPIV
GALDILANGQKNPRMRTMVNQIKNDIEGGSSLYESISKHPVYFDELYRNLVRAGERAGVLETVLDTVASYKENIEALKGK
IRKALFYPVAIVAVALIVSSILLIYVVPQFEDVFKGFGAELPAFTQMIVNFSNFMQRWWWAMLALLIVVIGGGLFTYKRS
ESMQHLLDRLVLKFPVIGAIMHNSALARFSRTTAVTFRAGVPLVEALGIVAGATGNKVYSDAVFRMRDDVSVGYSINMSM
RQVGIFPHMVVQMASIGEEAGALDAMLFKVAEYYEQEVSNAVDGLSSLLEPLIMVFIGVIVGGMVIAMYLPIFKLASVVG
Nucleotide
Download Length: 1203 bp
>NTDB_id=1105522 ACN3VN_RS10800 WP_011098309.1 2342174..2343376(-) (pilC) [Xylella fastidiosa strain CFBP8074]
TTGACTTCGTTTCTTTGGGAAGGGACGGATAAGCGCGGTGTCAAAATCAAGGGGGAACAGACAGCACGCACGGCGAACTT
GTTGCGTGCTGAGCTACGTCGTCAAGGCATCACGCCTCTTGTGGTTAAGCCGAGGCCTAAGCCGCTGTTTGGTCAGGCAG
GGAAGCGGATCACTCCGAAGGACATTGCCTTTTTTAGTCGCCAGATGGCGACGATGATGAAAGCCGGTGTTCCCATTGTC
GGGGCGTTGGATATTTTGGCTAACGGTCAGAAGAATCCGCGTATGCGTACGATGGTCAATCAAATTAAAAATGATATTGA
AGGCGGTTCCTCGCTGTATGAGTCAATCAGCAAGCACCCTGTATATTTCGATGAGCTTTATCGCAATCTGGTCAGGGCTG
GTGAGCGCGCGGGCGTGCTGGAGACGGTGCTTGATACGGTTGCTAGTTATAAGGAGAACATTGAGGCTCTGAAGGGAAAA
ATTCGCAAGGCGTTGTTTTATCCTGTTGCTATTGTCGCGGTTGCTCTCATTGTTAGTTCGATTTTATTGATATACGTGGT
GCCGCAGTTCGAGGATGTGTTCAAAGGATTCGGAGCGGAATTGCCTGCATTCACTCAGATGATTGTCAATTTTTCCAACT
TTATGCAGCGGTGGTGGTGGGCCATGTTGGCTCTGCTGATTGTTGTTATCGGTGGTGGTTTGTTTACTTACAAGCGCTCT
GAATCCATGCAACATCTGTTGGATAGGTTGGTGTTGAAGTTCCCGGTGATCGGGGCAATTATGCACAATAGCGCGCTTGC
TCGGTTCTCGCGAACAACAGCTGTTACTTTCCGTGCAGGGGTGCCACTGGTAGAGGCATTGGGTATCGTTGCTGGGGCAA
CCGGCAATAAGGTTTATTCGGATGCTGTGTTCCGCATGCGTGATGATGTTTCAGTTGGCTATTCTATAAATATGTCAATG
AGGCAAGTTGGTATCTTCCCTCATATGGTGGTGCAGATGGCTTCCATCGGTGAGGAAGCCGGTGCTCTGGACGCGATGCT
GTTTAAAGTTGCTGAGTACTATGAACAGGAAGTCAGTAACGCGGTCGATGGACTCAGCAGTTTGCTGGAACCGCTGATCA
TGGTCTTTATTGGTGTTATCGTCGGCGGCATGGTCATTGCTATGTATTTGCCGATCTTTAAGCTTGCTTCTGTCGTTGGA
TAA
TTGACTTCGTTTCTTTGGGAAGGGACGGATAAGCGCGGTGTCAAAATCAAGGGGGAACAGACAGCACGCACGGCGAACTT
GTTGCGTGCTGAGCTACGTCGTCAAGGCATCACGCCTCTTGTGGTTAAGCCGAGGCCTAAGCCGCTGTTTGGTCAGGCAG
GGAAGCGGATCACTCCGAAGGACATTGCCTTTTTTAGTCGCCAGATGGCGACGATGATGAAAGCCGGTGTTCCCATTGTC
GGGGCGTTGGATATTTTGGCTAACGGTCAGAAGAATCCGCGTATGCGTACGATGGTCAATCAAATTAAAAATGATATTGA
AGGCGGTTCCTCGCTGTATGAGTCAATCAGCAAGCACCCTGTATATTTCGATGAGCTTTATCGCAATCTGGTCAGGGCTG
GTGAGCGCGCGGGCGTGCTGGAGACGGTGCTTGATACGGTTGCTAGTTATAAGGAGAACATTGAGGCTCTGAAGGGAAAA
ATTCGCAAGGCGTTGTTTTATCCTGTTGCTATTGTCGCGGTTGCTCTCATTGTTAGTTCGATTTTATTGATATACGTGGT
GCCGCAGTTCGAGGATGTGTTCAAAGGATTCGGAGCGGAATTGCCTGCATTCACTCAGATGATTGTCAATTTTTCCAACT
TTATGCAGCGGTGGTGGTGGGCCATGTTGGCTCTGCTGATTGTTGTTATCGGTGGTGGTTTGTTTACTTACAAGCGCTCT
GAATCCATGCAACATCTGTTGGATAGGTTGGTGTTGAAGTTCCCGGTGATCGGGGCAATTATGCACAATAGCGCGCTTGC
TCGGTTCTCGCGAACAACAGCTGTTACTTTCCGTGCAGGGGTGCCACTGGTAGAGGCATTGGGTATCGTTGCTGGGGCAA
CCGGCAATAAGGTTTATTCGGATGCTGTGTTCCGCATGCGTGATGATGTTTCAGTTGGCTATTCTATAAATATGTCAATG
AGGCAAGTTGGTATCTTCCCTCATATGGTGGTGCAGATGGCTTCCATCGGTGAGGAAGCCGGTGCTCTGGACGCGATGCT
GTTTAAAGTTGCTGAGTACTATGAACAGGAAGTCAGTAACGCGGTCGATGGACTCAGCAGTTTGCTGGAACCGCTGATCA
TGGTCTTTATTGGTGTTATCGTCGGCGGCATGGTCATTGCTATGTATTTGCCGATCTTTAAGCTTGCTTCTGTCGTTGGA
TAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Pseudomonas stutzeri DSM 10701 |
54.75 |
100 |
0.548 |
| pilC | Legionella pneumophila strain ERS1305867 |
52.346 |
100 |
0.53 |
| pilC | Acinetobacter baylyi ADP1 |
51.25 |
100 |
0.513 |
| pilC | Acinetobacter baumannii D1279779 |
50.75 |
100 |
0.508 |
| pilG | Neisseria gonorrhoeae MS11 |
43.467 |
99.5 |
0.432 |
| pilG | Neisseria meningitidis 44/76-A |
42.965 |
99.5 |
0.428 |
| pilC | Vibrio cholerae strain A1552 |
40.943 |
100 |
0.413 |
| pilC | Vibrio campbellii strain DS40M4 |
40.399 |
100 |
0.405 |
| pilC | Thermus thermophilus HB27 |
37.352 |
100 |
0.395 |