Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   ACNSPE_RS13140 Genome accession   NZ_CP183326
Coordinates   2623875..2625128 (-) Length   417 a.a.
NCBI ID   WP_057763273.1    Uniprot ID   -
Organism   Cytobacillus praedii strain MM2025     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 2618875..2630128
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNSPE_RS13120 (ACNSPE_13120) spoVS 2618963..2619223 (-) 261 WP_009791522.1 stage V sporulation protein SpoVS -
  ACNSPE_RS13125 (ACNSPE_13125) - 2619693..2620490 (-) 798 WP_057763275.1 TIGR00282 family metallophosphoesterase -
  ACNSPE_RS13130 (ACNSPE_13130) rny 2620782..2622347 (-) 1566 WP_057763274.1 ribonuclease Y -
  ACNSPE_RS13135 (ACNSPE_13135) recA 2622597..2623637 (-) 1041 WP_053475735.1 recombinase RecA Machinery gene
  ACNSPE_RS13140 (ACNSPE_13140) cinA 2623875..2625128 (-) 1254 WP_057763273.1 competence/damage-inducible protein A Machinery gene
  ACNSPE_RS13145 (ACNSPE_13145) pgsA 2625171..2625749 (-) 579 WP_057763272.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACNSPE_RS13150 (ACNSPE_13150) - 2625801..2626709 (-) 909 WP_057763271.1 helix-turn-helix domain-containing protein -
  ACNSPE_RS13155 (ACNSPE_13155) - 2626732..2627523 (-) 792 WP_053475731.1 DUF3388 domain-containing protein -
  ACNSPE_RS13160 (ACNSPE_13160) - 2627682..2627942 (-) 261 WP_057763270.1 DUF3243 domain-containing protein -
  ACNSPE_RS13165 (ACNSPE_13165) ymfI 2628050..2628772 (-) 723 WP_057763269.1 elongation factor P 5-aminopentanone reductase -

Sequence

Protein


Download         Length: 417 a.a.        Molecular weight: 46071.08 Da        Isoelectric Point: 5.3594

>NTDB_id=1105290 ACNSPE_RS13140 WP_057763273.1 2623875..2625128(-) (cinA) [Cytobacillus praedii strain MM2025]
MNAEIIAVGSELLLGQIVNTNARFLSRQLADLGINVFYHTCVGDNPDRLKAVIKIAEERSNLLIFTGGLGPTKDDLTKET
IAKHVNKRLIMNNEALQSIELYFERTNRQMTENNKKQAIVLEDSHILPNEHGMAPGMLLEGGSHAYMLLPGPPKEMEPMF
LKYGYPVLRSLLQEEDVILSRVLRFFGIGEAMLETEIEDLIDAQTNPTIAPLASDGEVTLRLTAKHKQMDTALRLLDETE
KQILSRVGEYFYGYDETSLMHELIKFIKDKKLTIACAESLTGGMFQQVFTAIPGAGELLKGGVVCYTNEVKENVLNVQKT
TIAENGVVSEQCARELAKNVASLMNADIGISFTGVAGPDELEGKPVGTVYIGISIKDEPVQVEKLNFGGTRDAIRVRSVK
YGCHFLIKRLNGSQNAK

Nucleotide


Download         Length: 1254 bp        

>NTDB_id=1105290 ACNSPE_RS13140 WP_057763273.1 2623875..2625128(-) (cinA) [Cytobacillus praedii strain MM2025]
ATGAATGCAGAAATAATCGCAGTTGGTTCTGAACTTTTGTTAGGACAAATTGTAAATACAAATGCTCGTTTTTTGTCCAG
GCAGCTTGCTGATTTAGGGATTAATGTTTTTTACCATACTTGTGTTGGTGATAATCCTGATCGCCTTAAAGCAGTAATTA
AAATAGCTGAGGAGCGTTCGAATCTTCTAATATTCACTGGAGGATTAGGACCTACAAAAGATGACCTAACAAAGGAAACG
ATTGCAAAGCACGTAAATAAAAGACTGATTATGAATAATGAGGCTCTTCAATCGATTGAACTTTACTTTGAGCGCACGAA
TCGCCAGATGACAGAAAATAATAAGAAGCAGGCAATTGTTTTAGAGGATTCGCATATTTTGCCGAATGAGCATGGGATGG
CTCCTGGAATGCTGCTGGAGGGTGGAAGCCATGCCTATATGCTGCTTCCAGGACCACCAAAAGAAATGGAACCGATGTTT
TTGAAATATGGCTACCCAGTTCTTCGGTCACTGCTTCAAGAGGAAGATGTGATTCTTTCCCGAGTTTTAAGGTTTTTTGG
CATTGGAGAGGCAATGCTCGAAACAGAAATTGAAGATTTAATTGATGCTCAAACAAATCCGACAATCGCGCCACTTGCAT
CGGATGGGGAAGTAACTCTTCGGTTAACAGCTAAACATAAACAAATGGATACGGCTTTAAGACTGCTGGATGAGACTGAA
AAACAAATTCTTTCTCGAGTCGGTGAATACTTTTATGGTTATGATGAAACATCCTTAATGCATGAGTTAATTAAATTTAT
TAAGGATAAAAAGCTGACGATTGCTTGCGCTGAGAGTCTCACAGGAGGAATGTTCCAGCAGGTGTTTACAGCAATACCAG
GGGCAGGAGAGCTTCTTAAAGGCGGAGTTGTTTGCTATACAAATGAAGTGAAAGAAAATGTGCTAAACGTTCAGAAAACT
ACAATTGCTGAAAATGGAGTCGTTAGCGAGCAATGTGCGCGAGAGCTAGCAAAAAATGTTGCTTCCCTAATGAACGCAGA
TATTGGCATTAGCTTTACAGGGGTTGCGGGTCCGGATGAATTAGAAGGTAAGCCTGTAGGGACCGTGTACATTGGTATTT
CTATAAAAGATGAGCCAGTTCAAGTTGAAAAGCTAAATTTTGGCGGAACGAGAGATGCCATCCGGGTTAGAAGTGTAAAG
TATGGATGCCACTTTTTAATAAAGAGATTAAATGGAAGTCAGAATGCTAAATAG

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(257-409)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

61.52

97.842

0.602
  cinA Streptococcus pneumoniae TIGR4

45.714

100

0.46
  cinA Streptococcus mitis SK321

45.476

100

0.458
  cinA Streptococcus pneumoniae Rx1

45.238

100

0.456
  cinA Streptococcus mitis NCTC 12261

45.238

100

0.456
  cinA Streptococcus pneumoniae R6

45.238

100

0.456
  cinA Streptococcus pneumoniae D39

45

100

0.453
  cinA Streptococcus mutans UA159

43.914

100

0.441
  cinA Streptococcus suis isolate S10

38.677

94.245

0.365

Multiple sequence alignment