Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   ACN08S_RS21400 Genome accession   NZ_CP183265
Coordinates   2047658..2048761 (+) Length   367 a.a.
NCBI ID   WP_419209141.1    Uniprot ID   -
Organism   Photobacterium leiognathi subsp. mandapamensis strain Sr2.36     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2042658..2053761
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN08S_RS21380 (ACN08S_21380) rsmB 2043391..2044671 (-) 1281 WP_419209137.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  ACN08S_RS21385 (ACN08S_21385) fmt 2044762..2045706 (-) 945 WP_419209138.1 methionyl-tRNA formyltransferase -
  ACN08S_RS21390 (ACN08S_21390) def 2045723..2046232 (-) 510 WP_419209139.1 peptide deformylase -
  ACN08S_RS21395 (ACN08S_21395) - 2046590..2047651 (+) 1062 WP_419209140.1 LysM peptidoglycan-binding domain-containing protein -
  ACN08S_RS21400 (ACN08S_21400) dprA 2047658..2048761 (+) 1104 WP_419209141.1 DNA-processing protein DprA Machinery gene
  ACN08S_RS21405 (ACN08S_21405) - 2048758..2049231 (+) 474 WP_061014726.1 DUF494 family protein -
  ACN08S_RS21410 (ACN08S_21410) - 2049296..2049871 (+) 576 WP_060990170.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  ACN08S_RS21415 (ACN08S_21415) - 2049925..2051043 (-) 1119 WP_419209142.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  ACN08S_RS21420 (ACN08S_21420) purE 2051043..2051531 (-) 489 WP_005372382.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  ACN08S_RS21425 (ACN08S_21425) - 2051726..2052283 (+) 558 WP_023934032.1 L-threonylcarbamoyladenylate synthase -
  ACN08S_RS21430 (ACN08S_21430) hemF 2052289..2053197 (+) 909 WP_419209143.1 oxygen-dependent coproporphyrinogen oxidase -

Sequence

Protein


Download         Length: 367 a.a.        Molecular weight: 39723.44 Da        Isoelectric Point: 5.4283

>NTDB_id=1104937 ACN08S_RS21400 WP_419209141.1 2047658..2048761(+) (dprA) [Photobacterium leiognathi subsp. mandapamensis strain Sr2.36]
MTNALYPWLVLAMTPTLGGHRINKLLSKISAADCISLPFEQLRQLGLSEQQATAIVSPDQRRIDQVLAWHERPFQQVLTF
DSPHYPYLLKQISSPPPLLFIRGDASYLSKPQIAIIGSRSASIDGREAAFNFGYALGQAEYVVTSGLALGIDGQAHLGAL
KSGGATIAVLGSGLDQIYPARHRKLANDIVEQGALVSEFWPDEKPRPQNFPRRNRVISGLSTGVLVVEAAEKSGSLITAR
YALEQGREVFAIPGSIYNAQSKGCNILIKSGATLVESPLDIFNEVGILTECAINNQIGLSLPQPENEELPFPALLANVGT
EATPVDVVAERCEQPVHEILTQLLELELLGLVSAVPGGYIRTRRSES

Nucleotide


Download         Length: 1104 bp        

>NTDB_id=1104937 ACN08S_RS21400 WP_419209141.1 2047658..2048761(+) (dprA) [Photobacterium leiognathi subsp. mandapamensis strain Sr2.36]
ATGACTAATGCACTCTACCCTTGGTTAGTGCTGGCGATGACTCCAACATTAGGGGGTCATCGCATTAATAAATTATTAAG
TAAAATTTCTGCTGCTGACTGTATATCACTGCCGTTTGAACAATTACGTCAATTAGGGCTTAGTGAACAACAAGCCACTG
CTATAGTTTCGCCAGATCAGCGTCGAATCGATCAAGTTTTAGCTTGGCATGAACGACCATTTCAGCAAGTACTGACATTC
GATTCCCCTCATTATCCTTATTTACTCAAACAAATTTCGTCACCGCCTCCTTTGTTGTTTATTCGAGGAGATGCTTCCTA
TTTATCTAAGCCGCAAATTGCGATTATAGGCAGTCGTTCTGCATCCATTGATGGCAGAGAAGCCGCTTTTAATTTTGGTT
ATGCATTAGGACAAGCAGAATATGTGGTGACCAGCGGTTTAGCCTTAGGAATAGATGGCCAAGCGCATTTAGGGGCATTG
AAATCTGGTGGAGCCACCATTGCAGTACTGGGCTCTGGCTTAGATCAGATATATCCAGCCCGGCATCGAAAGTTAGCCAA
TGATATTGTTGAACAAGGAGCGTTGGTCTCAGAATTCTGGCCTGATGAAAAACCAAGGCCACAAAATTTCCCACGACGAA
ACCGAGTGATCAGTGGTTTATCAACCGGTGTATTAGTGGTAGAAGCGGCTGAAAAAAGTGGTTCACTTATTACTGCACGT
TACGCGCTGGAGCAAGGACGTGAAGTCTTTGCGATCCCAGGTTCTATCTATAACGCGCAAAGTAAGGGCTGTAATATCTT
GATAAAATCCGGTGCTACACTGGTAGAAAGCCCCCTCGATATTTTTAATGAAGTCGGAATCCTTACTGAGTGCGCAATAA
ATAATCAAATAGGCTTGTCTTTGCCACAACCTGAAAATGAAGAATTGCCATTTCCAGCGCTGTTGGCTAACGTAGGCACC
GAAGCAACACCCGTAGATGTAGTTGCTGAACGCTGTGAACAGCCTGTCCATGAAATATTAACCCAACTTTTAGAGTTGGA
ATTACTTGGTTTGGTTAGTGCAGTGCCAGGTGGTTATATCAGAACGAGGAGGAGCGAGTCATGA

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(312-358)

DNA recombination-mediator protein A (DNA_processg_A)

(75-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

56.51

98.365

0.556
  dprA Vibrio cholerae strain A1552

52.329

99.455

0.52
  dprA Glaesserella parasuis strain SC1401

47.425

100

0.477
  dprA Neisseria meningitidis strain C311

40.769

100

0.433
  dprA Neisseria meningitidis MC58

40.769

100

0.433
  dprA Legionella pneumophila strain ERS1305867

43.767

98.365

0.431
  dprA Haemophilus influenzae Rd KW20

45.161

92.916

0.42
  dprA Neisseria gonorrhoeae MS11

38.918

100

0.411
  dprA Neisseria gonorrhoeae strain FA1090

38.66

100

0.409

Multiple sequence alignment