Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   ACN08Q_RS23160 Genome accession   NZ_CP183255
Coordinates   3238847..3239950 (-) Length   367 a.a.
NCBI ID   WP_419238191.1    Uniprot ID   -
Organism   Photobacterium leiognathi subsp. mandapamensis strain Sr1.18     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3233847..3244950
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN08Q_RS23130 (ACN08Q_22930) hemF 3234410..3235318 (-) 909 WP_419238188.1 oxygen-dependent coproporphyrinogen oxidase -
  ACN08Q_RS23135 (ACN08Q_22935) - 3235324..3235881 (-) 558 WP_419238189.1 L-threonylcarbamoyladenylate synthase -
  ACN08Q_RS23140 (ACN08Q_22940) purE 3236076..3236564 (+) 489 WP_305402958.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  ACN08Q_RS23145 (ACN08Q_22945) - 3236564..3237682 (+) 1119 WP_419238190.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  ACN08Q_RS23150 (ACN08Q_22950) - 3237737..3238312 (-) 576 WP_060990170.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  ACN08Q_RS23155 (ACN08Q_22955) - 3238377..3238850 (-) 474 WP_061014726.1 DUF494 family protein -
  ACN08Q_RS23160 (ACN08Q_22960) dprA 3238847..3239950 (-) 1104 WP_419238191.1 DNA-processing protein DprA Machinery gene
  ACN08Q_RS23165 (ACN08Q_22965) - 3239957..3241018 (-) 1062 WP_008988356.1 LysM peptidoglycan-binding domain-containing protein -
  ACN08Q_RS23170 (ACN08Q_22970) def 3241376..3241885 (+) 510 WP_023934022.1 peptide deformylase -
  ACN08Q_RS23175 (ACN08Q_22975) fmt 3241902..3242846 (+) 945 WP_053986554.1 methionyl-tRNA formyltransferase -
  ACN08Q_RS23180 (ACN08Q_22980) rsmB 3242937..3244217 (+) 1281 WP_419238192.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 367 a.a.        Molecular weight: 39679.34 Da        Isoelectric Point: 5.4283

>NTDB_id=1104908 ACN08Q_RS23160 WP_419238191.1 3238847..3239950(-) (dprA) [Photobacterium leiognathi subsp. mandapamensis strain Sr1.18]
MTNALYPWLVLAMTPTLGGHRINKLLSKISAADCITLPFEQLRQLGLSEQQATAIASPDQRRIDQVLAWHERPFQQVLTL
DSPHYPYLLKQISSPPPLLFVRGDASYLSKPQIAIIGSRSASIDGREAAFNFGYALGQAEYVVTSGLALGIDGQAHLGAL
KSGGATIAVLGSGLDQIYPARHRKLANDIVEQGALVSEFWPDEKPRPQNFPRRNRVISGLSTGVLVVEAAEKSGSLITAR
YALEQGREVFAIPGSIYNTQSKGCNTLIKSGATLVESPLDIFNEVGILTECAINNQIGLSLPQPENEELPFPALLANVGT
EATPVDVVAERCEQPVHEILTQLLELELLGLVSAVPGGYIRTRRSES

Nucleotide


Download         Length: 1104 bp        

>NTDB_id=1104908 ACN08Q_RS23160 WP_419238191.1 3238847..3239950(-) (dprA) [Photobacterium leiognathi subsp. mandapamensis strain Sr1.18]
ATGACTAATGCACTCTACCCTTGGTTAGTGCTGGCGATGACTCCAACATTAGGGGGTCATCGCATTAATAAATTATTAAG
TAAAATTTCTGCTGCTGACTGTATAACACTGCCGTTTGAACAATTACGTCAGTTAGGGCTAAGTGAGCAACAAGCCACTG
CTATAGCTTCGCCAGATCAGCGTCGAATCGATCAAGTTTTGGCTTGGCATGAACGACCATTTCAGCAAGTGCTGACATTA
GATTCCCCTCATTATCCTTATTTACTCAAACAAATTTCGTCACCCCCTCCTTTGTTGTTTGTTCGAGGAGATGCTTCCTA
TTTATCTAAGCCGCAAATTGCGATCATAGGCAGTCGTTCGGCATCCATTGATGGCAGAGAAGCTGCCTTTAATTTTGGTT
ATGCGTTAGGACAAGCAGAATATGTGGTGACCAGTGGTTTAGCCTTAGGAATAGATGGCCAAGCCCATTTAGGGGCATTG
AAATCCGGTGGAGCCACCATTGCCGTGCTGGGCTCTGGCTTAGATCAGATATATCCAGCCCGGCATCGAAAGTTAGCTAA
TGATATTGTCGAGCAAGGAGCGTTGGTATCTGAATTCTGGCCTGATGAAAAACCAAGGCCACAAAATTTCCCACGACGAA
ACCGAGTGATCAGTGGTTTATCAACCGGCGTATTGGTAGTGGAAGCGGCTGAAAAAAGTGGTTCACTTATTACTGCACGT
TACGCGCTAGAGCAAGGGCGTGAAGTCTTTGCGATCCCTGGTTCTATCTATAACACGCAAAGTAAGGGCTGTAATACCTT
GATAAAATCCGGTGCTACACTGGTAGAAAGCCCCCTCGATATTTTTAATGAAGTCGGAATCCTTACTGAGTGCGCAATAA
ATAATCAAATAGGCTTGTCTTTGCCACAACCTGAAAATGAAGAATTGCCATTTCCAGCGCTGTTGGCTAACGTAGGCACC
GAAGCAACACCCGTAGATGTAGTTGCTGAACGCTGTGAACAGCCTGTCCATGAAATATTAACCCAACTTTTAGAGTTGGA
ATTACTTGGTTTGGTTAGTGCAGTGCCAGGTGGTTATATCAGAACGAGGAGGAGCGAGTCATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(75-276)

DprA winged helix domain (DprA_WH)

(312-358)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

57.064

98.365

0.561
  dprA Vibrio cholerae strain A1552

51.507

99.455

0.512
  dprA Glaesserella parasuis strain SC1401

47.967

100

0.482
  dprA Neisseria meningitidis strain C311

40.769

100

0.433
  dprA Neisseria meningitidis MC58

40.769

100

0.433
  dprA Legionella pneumophila strain ERS1305867

43.767

98.365

0.431
  dprA Haemophilus influenzae Rd KW20

45.455

92.916

0.422
  dprA Neisseria gonorrhoeae MS11

38.918

100

0.411
  dprA Neisseria gonorrhoeae strain FA1090

38.66

100

0.409

Multiple sequence alignment