Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   ACN08M_RS07200 Genome accession   NZ_CP183250
Coordinates   1470115..1471218 (+) Length   367 a.a.
NCBI ID   WP_419239538.1    Uniprot ID   -
Organism   Photobacterium leiognathi subsp. mandapamensis strain Sc16.3     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1465115..1476218
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN08M_RS07180 (ACN08M_07180) rsmB 1465848..1467128 (-) 1281 WP_419239537.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  ACN08M_RS07185 (ACN08M_07185) fmt 1467219..1468163 (-) 945 WP_061014723.1 methionyl-tRNA formyltransferase -
  ACN08M_RS07190 (ACN08M_07190) def 1468180..1468689 (-) 510 WP_023934022.1 peptide deformylase -
  ACN08M_RS07195 (ACN08M_07195) - 1469047..1470108 (+) 1062 WP_008988356.1 LysM peptidoglycan-binding domain-containing protein -
  ACN08M_RS07200 (ACN08M_07200) dprA 1470115..1471218 (+) 1104 WP_419239538.1 DNA-processing protein DprA Machinery gene
  ACN08M_RS07205 (ACN08M_07205) - 1471215..1471688 (+) 474 WP_061014726.1 DUF494 family protein -
  ACN08M_RS07210 (ACN08M_07210) - 1471753..1472328 (+) 576 WP_419239539.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  ACN08M_RS07215 (ACN08M_07215) - 1472383..1473501 (-) 1119 WP_419239540.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  ACN08M_RS07220 (ACN08M_07220) purE 1473501..1473989 (-) 489 WP_419239541.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  ACN08M_RS07225 (ACN08M_07225) - 1474184..1474741 (+) 558 WP_023934032.1 L-threonylcarbamoyladenylate synthase -
  ACN08M_RS07230 (ACN08M_07230) hemF 1474747..1475655 (+) 909 WP_107176508.1 oxygen-dependent coproporphyrinogen oxidase -

Sequence

Protein


Download         Length: 367 a.a.        Molecular weight: 39710.44 Da        Isoelectric Point: 5.4283

>NTDB_id=1104859 ACN08M_RS07200 WP_419239538.1 1470115..1471218(+) (dprA) [Photobacterium leiognathi subsp. mandapamensis strain Sc16.3]
MTNALYPWLVLAMTPTLGGHRINKLLSKISAADCIALPFEQLRQLGLSEQQATAIVSPDQRRIDQVLAWHERPFQQVLTF
DSPHYPYLLKQISSPPPLLFIRGDASYLSKPQIAIIGSRSASIDGREAAFNFGYALGQAEYVVTSGLALGIDGQAHLGAL
KSGGATIAVLGSGLDQIYPARHRKLANDIVEQGALVSEFWPDEKPRPQNFPRRNRVISGLSTGVLVVEAAEKSGSLITAR
YALEQGREVFAIPGSIYNTQSKGCNTLIKSGATLVESPLDIFNEVGILTECAINNQIGLSLPLPENEELPFPALLANVGT
EATPVDVVAERCEQPVHEILTQLLELELLGLVSAVPGGYIRTRRSES

Nucleotide


Download         Length: 1104 bp        

>NTDB_id=1104859 ACN08M_RS07200 WP_419239538.1 1470115..1471218(+) (dprA) [Photobacterium leiognathi subsp. mandapamensis strain Sc16.3]
ATGACTAACGCACTCTACCCTTGGTTAGTGCTGGCGATGACTCCAACATTAGGGGGTCATCGCATTAATAAATTATTAAG
TAAAATTTCTGCTGCTGACTGTATAGCACTGCCGTTTGAACAATTACGTCAATTGGGACTAAGTGAGCAACAAGCCACTG
CTATAGTGTCGCCAGATCAGCGTCGAATCGATCAAGTTTTGGCTTGGCATGAACGACCATTTCAGCAAGTGCTGACATTC
GATTCCCCTCATTACCCTTATTTACTCAAACAAATCTCGTCACCGCCTCCCTTATTGTTTATTCGAGGAGATGCTTCCTA
TTTATCTAAGCCACAAATTGCGATCATAGGCAGTCGTTCGGCATCCATTGATGGCAGAGAAGCTGCCTTTAATTTTGGTT
ATGCGTTAGGACAAGCAGAATATGTGGTGACCAGTGGTTTAGCCTTAGGAATAGACGGCCAAGCCCATTTAGGGGCATTG
AAATCTGGTGGTGCCACCATTGCAGTACTGGGCTCTGGCTTAGATCAGATATATCCAGCCCGACATCGAAAGTTAGCCAA
TGATATTGTTGAGCAAGGGGCGTTGGTATCAGAATTCTGGCCTGATGAAAAACCAAGACCACAAAATTTTCCTCGACGAA
ATAGAGTGATCAGTGGCTTATCGACCGGCGTATTAGTCGTAGAGGCGGCTGAAAAAAGTGGTTCACTCATCACTGCACGT
TACGCGCTAGAGCAAGGGCGTGAAGTGTTTGCGATCCCTGGTTCTATCTATAACACGCAAAGTAAGGGCTGTAATACCTT
GATAAAATCCGGTGCTACACTGGTAGAAAGTCCCCTCGATATTTTTAATGAAGTCGGAATCCTTACTGAGTGCGCAATAA
ATAATCAAATAGGCTTGTCTTTGCCACTACCTGAAAATGAAGAATTGCCATTTCCAGCGCTGTTGGCTAACGTAGGCACC
GAAGCAACACCCGTAGATGTAGTTGCTGAACGCTGTGAACAGCCTGTCCATGAAATATTAACCCAACTTTTAGAGTTGGA
ATTACTTGGTTTGGTTAGTGCAGTGCCAGGTGGTTATATCAGAACGAGGAGGAGCGAGTCATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(75-276)

DprA winged helix domain (DprA_WH)

(312-358)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

57.182

98.638

0.564
  dprA Vibrio cholerae strain A1552

51.781

99.455

0.515
  dprA Glaesserella parasuis strain SC1401

47.425

100

0.477
  dprA Neisseria meningitidis strain C311

41.026

100

0.436
  dprA Neisseria meningitidis MC58

41.026

100

0.436
  dprA Legionella pneumophila strain ERS1305867

43.767

98.365

0.431
  dprA Haemophilus influenzae Rd KW20

45.161

92.916

0.42
  dprA Neisseria gonorrhoeae MS11

38.402

100

0.406
  dprA Neisseria gonorrhoeae strain FA1090

38.144

100

0.403

Multiple sequence alignment