Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   ACN08T_RS01655 Genome accession   NZ_CP183248
Coordinates   337518..338621 (-) Length   367 a.a.
NCBI ID   WP_318466464.1    Uniprot ID   -
Organism   Photobacterium leiognathi subsp. mandapamensis strain Sc9.10a     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 332518..343621
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN08T_RS01625 (ACN08T_01625) hemF 333082..333990 (-) 909 WP_107176508.1 oxygen-dependent coproporphyrinogen oxidase -
  ACN08T_RS01630 (ACN08T_01630) - 333996..334553 (-) 558 WP_023934032.1 L-threonylcarbamoyladenylate synthase -
  ACN08T_RS01635 (ACN08T_01635) purE 334748..335236 (+) 489 WP_005372382.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  ACN08T_RS01640 (ACN08T_01640) - 335236..336354 (+) 1119 WP_419205083.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  ACN08T_RS01645 (ACN08T_01645) - 336408..336983 (-) 576 WP_419205084.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  ACN08T_RS01650 (ACN08T_01650) - 337048..337521 (-) 474 WP_061014726.1 DUF494 family protein -
  ACN08T_RS01655 (ACN08T_01655) dprA 337518..338621 (-) 1104 WP_318466464.1 DNA-processing protein DprA Machinery gene
  ACN08T_RS01660 (ACN08T_01660) - 338628..339689 (-) 1062 WP_419205085.1 LysM peptidoglycan-binding domain-containing protein -
  ACN08T_RS01665 (ACN08T_01665) def 340047..340556 (+) 510 WP_023934022.1 peptide deformylase -
  ACN08T_RS01670 (ACN08T_01670) fmt 340573..341517 (+) 945 WP_419205086.1 methionyl-tRNA formyltransferase -
  ACN08T_RS01675 (ACN08T_01675) rsmB 341608..342888 (+) 1281 WP_419205087.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 367 a.a.        Molecular weight: 39691.40 Da        Isoelectric Point: 5.4283

>NTDB_id=1104801 ACN08T_RS01655 WP_318466464.1 337518..338621(-) (dprA) [Photobacterium leiognathi subsp. mandapamensis strain Sc9.10a]
MTNALYPWLVLAMTPTLGGHRINKLLSKISAADCIALPFEQLRQLGLSEQQATAIVSPDQRRIDQVLAWHERPFQQVLTL
DSPHYPYLLKQITSPPPLLFVRGDASYLSKPQIAIIGSRSASIDGREAAFNFGYALGQAEYVVTSGLALGIDGQAHLGAL
KSGGATIAVLGSGLDQIYPARHRKLANDIVEQGALVSEFWPDEKPRPQNFPRRNRVISGLSTGVLVVEAAEKSGSLITAR
YALEQGREVFAIPGSIYNTQSKGCNTLIKSGATLVESPLDIFNEVGILTECAINNQIGLSLPQPENEELPFPALLANVGT
EATPVDVVAERCEQPVHEILTQLLELELLGLVSAVPGGYIRTRRSES

Nucleotide


Download         Length: 1104 bp        

>NTDB_id=1104801 ACN08T_RS01655 WP_318466464.1 337518..338621(-) (dprA) [Photobacterium leiognathi subsp. mandapamensis strain Sc9.10a]
ATGACTAACGCACTCTACCCTTGGTTAGTGCTGGCGATGACTCCAACATTAGGGGGTCATCGCATTAATAAATTATTGAG
TAAAATTTCTGCTGCTGACTGTATAGCACTGCCGTTTGAACAATTACGTCAATTGGGTCTAAGTGAGCAACAAGCCACTG
CTATAGTTTCGCCAGATCAGCGTCGAATCGATCAAGTTTTGGCTTGGCATGAACGACCATTTCAGCAAGTGCTGACATTA
GATTCCCCTCATTATCCTTATCTACTCAAACAAATCACGTCACCGCCTCCCTTGTTGTTTGTTCGAGGAGATGCTTCCTA
TTTATCTAAGCCACAAATTGCGATCATAGGCAGCCGTTCGGCATCCATTGATGGCAGAGAAGCGGCCTTTAATTTTGGTT
ATGCGTTAGGACAAGCAGAATACGTGGTGACCAGCGGTTTAGCTTTAGGAATAGATGGCCAAGCCCATTTAGGGGCATTG
AAATCCGGTGGTGCCACCATTGCAGTACTGGGCTCTGGCTTAGATCAGATATATCCAGCCCGGCATCGAAAGTTAGCCAA
TGATATTGTTGAACAAGGAGCGTTGGTCTCAGAATTCTGGCCTGATGAAAAACCAAGGCCACAAAATTTCCCACGACGAA
ACCGAGTGATCAGTGGTTTATCAACCGGCGTATTAGTGGTAGAAGCGGCTGAAAAAAGTGGTTCACTTATTACTGCACGT
TACGCGTTAGAGCAAGGGCGTGAAGTCTTTGCTATCCCAGGTTCTATCTATAACACGCAAAGTAAGGGCTGTAATACCTT
GATAAAATCCGGTGCTACACTGGTAGAAAGTCCTCTCGATATTTTTAATGAAGTCGGAATCCTTACTGAGTGCGCAATAA
ATAATCAAATAGGCTTGTCTTTGCCACAACCTGAAAATGAAGAATTGCCATTTCCAGCGCTGTTGGCTAACGTAGGCACC
GAAGCAACACCCGTAGATGTAGTTGCTGAACGCTGTGAACAGCCTGTCCATGAAATATTAACCCAACTTTTAGAGTTGGA
ATTACTTGGTTTGGTTAGTGCAGTGCCAGGTGGTTATATCAGAACGAGGAGGAGCGAGTCATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(75-276)

DprA winged helix domain (DprA_WH)

(312-358)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

57.064

98.365

0.561
  dprA Vibrio cholerae strain A1552

51.507

99.455

0.512
  dprA Glaesserella parasuis strain SC1401

47.696

100

0.48
  dprA Neisseria meningitidis strain C311

40.769

100

0.433
  dprA Neisseria meningitidis MC58

40.769

100

0.433
  dprA Legionella pneumophila strain ERS1305867

43.767

98.365

0.431
  dprA Haemophilus influenzae Rd KW20

45.455

92.916

0.422
  dprA Neisseria gonorrhoeae MS11

38.918

100

0.411
  dprA Neisseria gonorrhoeae strain FA1090

38.66

100

0.409

Multiple sequence alignment