Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACBO77_RS16495 Genome accession   NZ_CP182134
Coordinates   3817539..3818798 (+) Length   419 a.a.
NCBI ID   WP_043088082.1    Uniprot ID   A0AAQ0W2R1
Organism   Xanthomonas arboricola pv. pruni strain Xap 9-4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 3814839..3838003 3817539..3818798 within 0


Gene organization within MGE regions


Location: 3814839..3838003
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACBO77_RS16485 pilB 3814839..3816572 (-) 1734 WP_039512338.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACBO77_RS16490 - 3816757..3817161 (-) 405 WP_043088084.1 pilin -
  ACBO77_RS16495 pilC 3817539..3818798 (+) 1260 WP_043088082.1 type II secretion system F family protein Machinery gene
  ACBO77_RS16500 - 3818805..3819668 (+) 864 WP_016849610.1 prepilin peptidase -
  ACBO77_RS16505 coaE 3819682..3820305 (+) 624 WP_043088081.1 dephospho-CoA kinase -
  ACBO77_RS16510 - 3820315..3820560 (+) 246 WP_372160084.1 SymE family type I addiction module toxin -
  ACBO77_RS16515 - 3820666..3822000 (-) 1335 WP_016904089.1 sensor histidine kinase -
  ACBO77_RS16520 - 3821993..3822670 (-) 678 WP_006448355.1 response regulator transcription factor -
  ACBO77_RS16525 - 3822771..3823130 (-) 360 WP_223571086.1 hypothetical protein -
  ACBO77_RS16530 rimK 3823357..3824262 (-) 906 WP_166767257.1 30S ribosomal protein S6--L-glutamate ligase -
  ACBO77_RS16535 glgX 3824753..3826885 (+) 2133 WP_039516331.1 glycogen debranching protein GlgX -
  ACBO77_RS16540 - 3827557..3827949 (-) 393 WP_023904915.1 H-NS family nucleoid-associated regulatory protein -
  ACBO77_RS16545 - 3828038..3828424 (-) 387 WP_026064907.1 hypothetical protein -
  ACBO77_RS16550 - 3829240..3829581 (+) 342 WP_043088080.1 hypothetical protein -
  ACBO77_RS16555 - 3829634..3831235 (-) 1602 WP_039516320.1 MobA/MobL family protein -
  ACBO77_RS16560 - 3831501..3831755 (+) 255 WP_039516317.1 hypothetical protein -
  ACBO77_RS16565 - 3831783..3833216 (-) 1434 WP_043088079.1 hypothetical protein -
  ACBO77_RS16570 - 3833209..3833886 (-) 678 WP_416639822.1 hypothetical protein -
  ACBO77_RS16575 - 3834923..3835552 (+) 630 WP_039516323.1 hypothetical protein -
  ACBO77_RS16580 - 3835552..3836148 (+) 597 WP_080640147.1 hypothetical protein -
  ACBO77_RS16585 - 3836896..3837243 (+) 348 Protein_3242 integrase -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45795.12 Da        Isoelectric Point: 10.3152

>NTDB_id=1100526 ACBO77_RS16495 WP_043088082.1 3817539..3818798(+) (pilC) [Xanthomonas arboricola pv. pruni strain Xap 9-4]
MSAIRSAIKKEAVSRSIDQQLQFIWEGKDKRGVKMKGEQTSKSANLLRAELRRQGITPTVVKVKPKPLFGAAGKTVTPKD
IAFFSRQMATMMKSGVPIVGALEIIGSGHKNPRMRNMVGQIRTDIEGGSSLHEAISKHPVQFDELYRNLVRAGEGAGVLE
TVLDTVANYKENIEALKGKIKKAMFYPAMVMAVALIVSSILLVWVVPQFEDVFKGFGAELPAFTQMIVNASRFMVAWWWL
LLIVLVGSITGFIFAYKRSPAMQHGMDRLILKAPVLGQIMHNSSIARFARTTAVTFKAGVPLVEALSIVAGATGNSVYEK
AVLRMRDDVSVGYPVNVAMKQVNLFPHMVVQMTSIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLLEPIIMVFIGTIV
GGMVIGMYLPIFKLASVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=1100526 ACBO77_RS16495 WP_043088082.1 3817539..3818798(+) (pilC) [Xanthomonas arboricola pv. pruni strain Xap 9-4]
ATGTCAGCAATACGTAGCGCAATCAAGAAAGAGGCCGTGTCCCGCTCAATCGACCAGCAGTTGCAATTCATCTGGGAGGG
TAAGGACAAGCGCGGCGTCAAGATGAAGGGGGAACAGACCTCCAAGAGTGCTAACTTGCTGCGCGCAGAATTGCGTCGCC
AAGGCATCACGCCAACGGTAGTGAAGGTCAAACCCAAGCCGTTATTCGGCGCGGCGGGCAAGACGGTCACACCTAAAGAT
ATCGCTTTTTTCAGCCGTCAAATGGCGACGATGATGAAGTCAGGCGTCCCAATTGTGGGTGCCCTCGAAATTATTGGCAG
TGGCCACAAGAACCCCCGTATGCGGAACATGGTTGGGCAGATCCGCACGGATATTGAGGGGGGCTCCTCGTTGCATGAAG
CAATTAGCAAGCATCCCGTGCAATTTGACGAGCTCTACCGAAATCTCGTCCGTGCAGGCGAAGGCGCGGGCGTACTTGAG
ACCGTTCTTGATACGGTGGCGAATTACAAAGAAAACATCGAAGCACTTAAGGGCAAGATCAAAAAAGCGATGTTCTACCC
GGCAATGGTGATGGCCGTCGCACTGATTGTCAGCTCCATCCTCCTTGTTTGGGTGGTACCCCAATTTGAAGACGTTTTCA
AAGGTTTTGGCGCGGAGCTTCCTGCATTTACACAGATGATCGTCAACGCTTCGCGATTCATGGTTGCGTGGTGGTGGCTC
CTTTTGATTGTATTAGTAGGAAGTATCACTGGCTTTATATTCGCTTATAAACGCTCGCCTGCTATGCAACACGGCATGGA
CCGCCTGATCTTGAAGGCCCCCGTCCTAGGCCAAATAATGCATAACAGCTCGATAGCCCGATTTGCCCGTACGACGGCGG
TGACATTCAAGGCTGGCGTGCCCTTGGTAGAGGCGCTGAGCATCGTTGCAGGTGCGACAGGCAATTCGGTCTATGAGAAG
GCTGTGTTACGTATGCGCGACGACGTTTCAGTCGGCTATCCAGTCAACGTGGCAATGAAACAGGTCAATCTGTTCCCGCA
TATGGTTGTACAGATGACTTCAATCGGTGAGGAGGCCGGCGCATTGGATGCGATGCTATTCAAGGTAGCCGAATACTTCG
AACAAGAAGTCAACAATGCTGTCGATGCATTGAGCAGCTTGCTAGAACCCATCATCATGGTATTCATTGGTACCATCGTC
GGCGGCATGGTCATCGGCATGTACCTGCCCATCTTCAAGCTCGCTTCGGTGGTTGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

53.535

94.511

0.506
  pilC Legionella pneumophila strain ERS1305867

51.759

94.988

0.492
  pilC Acinetobacter baylyi ADP1

51.385

94.749

0.487
  pilC Acinetobacter baumannii D1279779

51.385

94.749

0.487
  pilG Neisseria gonorrhoeae MS11

43.035

95.943

0.413
  pilG Neisseria meningitidis 44/76-A

42.537

95.943

0.408
  pilC Vibrio cholerae strain A1552

41.206

94.988

0.391
  pilC Vibrio campbellii strain DS40M4

38.916

96.897

0.377

Multiple sequence alignment