Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   ABXS88_RS01590 Genome accession   NZ_AP031572
Coordinates   328396..328761 (+) Length   121 a.a.
NCBI ID   WP_353673454.1    Uniprot ID   -
Organism   Synechocystis sp. LKSZ1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 323396..333761
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXS88_RS01580 (OLK001_03030) clpB 324044..326731 (+) 2688 WP_353673452.1 ATP-dependent chaperone ClpB -
  ABXS88_RS01585 (OLK001_03040) - 327050..328270 (+) 1221 WP_353673453.1 response regulator -
  ABXS88_RS01590 (OLK001_03050) pilH 328396..328761 (+) 366 WP_353673454.1 response regulator Machinery gene
  ABXS88_RS01595 (OLK001_03060) - 328933..329463 (+) 531 WP_353673455.1 chemotaxis protein CheW -
  ABXS88_RS01600 (OLK001_03070) pilJ 329567..332245 (+) 2679 WP_353673456.1 methyl-accepting chemotaxis protein Machinery gene
  ABXS88_RS01605 (OLK001_03080) - 332390..333004 (+) 615 WP_353673457.1 YdcF family protein -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13646.83 Da        Isoelectric Point: 5.8911

>NTDB_id=110020 ABXS88_RS01590 WP_353673454.1 328396..328761(+) (pilH) [Synechocystis sp. LKSZ1]
MSEVLLVEDSSSQREMISGILRDNGWKVTVACDGVEALEHLQKFSPDLVVLDIVMPRMNGYEVCRRIKSDPKTKNVPVIM
CSSKGEEFDRYWGMRQGADAYIAKPFQPVELVGTIKQLLRG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=110020 ABXS88_RS01590 WP_353673454.1 328396..328761(+) (pilH) [Synechocystis sp. LKSZ1]
ATGAGCGAAGTTTTGCTTGTTGAAGATAGCTCCAGTCAGCGAGAAATGATCTCTGGAATCCTGCGGGACAATGGTTGGAA
GGTAACGGTTGCCTGCGATGGAGTCGAAGCCTTAGAGCATCTCCAAAAATTTAGCCCAGACTTAGTTGTATTAGATATTG
TGATGCCCCGGATGAATGGCTACGAAGTCTGCCGGCGCATCAAGTCTGACCCTAAGACCAAAAATGTACCCGTCATTATG
TGTTCCTCTAAGGGAGAAGAATTTGACCGCTATTGGGGAATGCGCCAGGGGGCCGATGCTTATATTGCCAAACCGTTTCA
ACCCGTTGAATTGGTGGGAACGATTAAACAACTGCTACGGGGATAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

90.909

100

0.909
  pilG Acinetobacter baumannii strain A118

40

95.041

0.38
  micA Streptococcus pneumoniae Cp1015

38.333

99.174

0.38
  vicR Streptococcus mutans UA159

37.5

99.174

0.372
  pilL-C Synechocystis sp. PCC 6803

37.19

100

0.372
  chpA Acinetobacter baumannii strain A118

38.793

95.868

0.372
  scnR Streptococcus mutans UA159

37.815

98.347

0.372

Multiple sequence alignment