Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilJ   Type   Machinery gene
Locus tag   ABXS88_RS01600 Genome accession   NZ_AP031572
Coordinates   329567..332245 (+) Length   892 a.a.
NCBI ID   WP_353673456.1    Uniprot ID   -
Organism   Synechocystis sp. LKSZ1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 324567..337245
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXS88_RS01585 (OLK001_03040) - 327050..328270 (+) 1221 WP_353673453.1 response regulator -
  ABXS88_RS01590 (OLK001_03050) pilH 328396..328761 (+) 366 WP_353673454.1 response regulator Machinery gene
  ABXS88_RS01595 (OLK001_03060) - 328933..329463 (+) 531 WP_353673455.1 chemotaxis protein CheW -
  ABXS88_RS01600 (OLK001_03070) pilJ 329567..332245 (+) 2679 WP_353673456.1 methyl-accepting chemotaxis protein Machinery gene
  ABXS88_RS01605 (OLK001_03080) - 332390..333004 (+) 615 WP_353673457.1 YdcF family protein -
  ABXS88_RS01610 (OLK001_03090) - 333035..334429 (+) 1395 WP_353673458.1 amidase -

Sequence

Protein


Download         Length: 892 a.a.        Molecular weight: 95547.12 Da        Isoelectric Point: 4.0809

>NTDB_id=110021 ABXS88_RS01600 WP_353673456.1 329567..332245(+) (pilJ) [Synechocystis sp. LKSZ1]
MASEKDYAKLYGQAYAAYGQGNYTEAVTYIDEMAEAFPQDPNVLLLQGHISIGLEHYDVAQQKYEQVLQLSDRQDLVECA
QAALAQIQGVGTAKTGQSFTTMGTASEANGISWKDSIPEDWDMGIDDLDWDSAVFSDEDFGEPTLGKTGPEPSATPLGES
PQAVEVVPAANPFTADPFESQAGDGKIDWDAAATIDWDSELFREEVAKSDDEDTMLPDVGASTFVVPPSVEPSPALNFAE
RGNGQTPFDLASPGAEASPAYQAWMDDETDEDLDSLLEHENVPTVQSSPTMAAEAQNLNSATPGFEPSNFDDLADFDLTD
LAPELPDSSLFTQAGAALTASSELQAEQEIDASATLAGAPPPGMVTWLKPEEGGTNDFSGASSRFVKPTVEIDPGWLGWF
TNAPLKRKQLYLALATGLASGLAVIVVNAALAMGQGKTSPPATPPTPGKTASKPAANSAPAPTVTAPSPLVVAGLTGLVT
ALATFLVSNLLVRQVKQTIDDLQNQFDAIYEGNFNVRAKVRSEDELGQLAQRFNYISQVILTATSEAQERAAATEKAREK
LQRQVIRLLDDVEGASRGDLTVQAEVTADELGAVADAFNLTIQNLREIVLQVKKAAKQVNRNCTDSESFARNNSSDALRM
AEELAVTLNSVQLMTESIQRVAENAREAEEVAHTSSLTALKGGEAVERTVGGILQIRETVSETARKVKRLAEASQEISKI
VAVISQIASRTNLLALNASIQAARAGEAGRGFAIVADEVRQLADRSAKSLKDIEQIVLQIQSETGSVMTAMEEGIQQVID
VTDKSEQSKRALEDIIEVSNRINTLVRSITADTVRQQENSSSVAQVMQSIELTAQETSQESQRVAGSLQTLVSISRDLLT
SVERFRLEQSLK

Nucleotide


Download         Length: 2679 bp        

>NTDB_id=110021 ABXS88_RS01600 WP_353673456.1 329567..332245(+) (pilJ) [Synechocystis sp. LKSZ1]
ATGGCATCTGAGAAAGACTATGCAAAGTTATACGGTCAAGCCTATGCCGCCTACGGCCAAGGAAACTATACCGAAGCCGT
CACCTATATTGATGAAATGGCCGAGGCCTTTCCTCAGGATCCCAATGTGTTACTCCTGCAAGGGCATATTTCCATTGGCC
TGGAACACTACGATGTCGCACAACAAAAATACGAGCAGGTACTCCAGCTCTCGGATCGTCAAGATTTAGTGGAATGTGCC
CAAGCAGCCCTGGCCCAAATTCAAGGGGTTGGGACGGCCAAGACTGGTCAAAGTTTTACCACCATGGGAACTGCTAGTGA
AGCCAATGGCATTTCCTGGAAAGATTCGATTCCTGAAGATTGGGATATGGGCATTGATGACTTGGATTGGGATAGTGCCG
TCTTTAGCGATGAGGACTTTGGAGAGCCGACCCTGGGAAAAACCGGGCCAGAACCATCGGCTACGCCCTTGGGTGAATCC
CCTCAGGCCGTAGAAGTGGTTCCCGCCGCGAATCCCTTTACCGCAGACCCCTTTGAGTCTCAAGCTGGGGATGGAAAAAT
TGACTGGGACGCCGCTGCGACCATTGATTGGGATTCCGAACTATTTCGTGAAGAAGTAGCAAAAAGTGATGACGAAGATA
CCATGTTGCCCGATGTCGGGGCCTCGACCTTTGTGGTTCCCCCCAGTGTGGAACCGTCCCCCGCGTTGAATTTTGCTGAA
AGAGGCAATGGACAAACGCCCTTTGACCTGGCCTCCCCAGGGGCGGAAGCTAGTCCTGCCTACCAGGCCTGGATGGATGA
TGAAACCGACGAAGACCTCGATTCTCTCCTAGAGCATGAAAATGTACCAACGGTGCAATCCTCGCCGACCATGGCAGCGG
AGGCCCAGAACCTTAACTCGGCTACCCCTGGTTTTGAACCCAGTAATTTTGATGACCTGGCGGATTTTGACCTGACGGAT
CTGGCCCCCGAACTACCGGATTCCTCCCTGTTTACCCAGGCTGGCGCTGCTCTAACGGCCTCCTCTGAACTTCAGGCTGA
GCAGGAAATAGATGCTTCCGCTACGCTAGCCGGTGCTCCCCCGCCAGGCATGGTAACCTGGCTCAAACCTGAAGAAGGAG
GAACAAATGATTTTTCTGGGGCCTCCAGTCGTTTTGTGAAGCCCACGGTTGAAATAGATCCCGGTTGGCTGGGTTGGTTT
ACCAATGCCCCCCTCAAACGCAAGCAACTCTACCTGGCCCTAGCAACGGGGCTTGCCTCTGGCCTGGCAGTCATCGTGGT
GAACGCGGCCTTGGCCATGGGTCAGGGAAAAACATCCCCCCCTGCGACGCCCCCCACCCCCGGTAAAACGGCATCGAAAC
CAGCCGCTAACAGTGCTCCAGCCCCTACTGTGACAGCCCCTTCCCCCTTGGTCGTAGCGGGTCTGACGGGTCTGGTGACG
GCCCTAGCCACGTTTTTGGTTAGTAATCTGCTAGTTCGTCAAGTGAAGCAGACCATCGATGATCTGCAAAACCAGTTTGA
TGCCATCTACGAAGGCAACTTTAATGTCCGTGCTAAGGTGCGTTCCGAGGATGAATTAGGCCAATTGGCCCAACGCTTTA
ACTACATTTCTCAAGTGATTCTGACGGCGACTAGTGAGGCCCAGGAGCGGGCGGCGGCCACAGAAAAAGCCCGGGAAAAA
CTCCAGCGCCAAGTCATTCGTCTCCTGGATGATGTGGAGGGGGCCTCTCGGGGAGACCTGACCGTCCAAGCAGAAGTTAC
AGCGGATGAACTGGGAGCGGTGGCCGATGCCTTTAACCTGACCATCCAAAATCTGCGGGAGATCGTTCTCCAGGTGAAAA
AGGCCGCCAAACAGGTTAACCGGAACTGTACGGATAGCGAATCCTTTGCCCGCAATAACTCCAGTGATGCGCTGCGAATG
GCGGAAGAATTAGCCGTCACCCTCAATTCGGTACAGTTAATGACGGAATCCATTCAACGGGTTGCTGAAAATGCGCGGGA
AGCAGAGGAAGTTGCCCATACCTCTTCCCTAACGGCACTGAAGGGGGGAGAAGCCGTAGAGCGAACCGTGGGCGGGATTC
TGCAAATTCGAGAAACGGTGTCAGAAACGGCCCGCAAGGTTAAACGCCTAGCGGAAGCCTCCCAGGAAATTTCTAAGATT
GTGGCGGTGATTTCTCAAATTGCCTCTCGTACTAATCTCTTGGCATTGAACGCCTCCATCCAGGCGGCGCGAGCAGGGGA
AGCGGGGCGGGGCTTTGCCATCGTGGCAGACGAAGTCCGACAACTTGCAGACCGCTCTGCCAAGTCGCTAAAAGATATTG
AACAAATCGTGTTGCAGATCCAGAGTGAGACTGGCTCGGTAATGACGGCCATGGAAGAAGGGATTCAACAGGTGATCGAT
GTAACCGATAAATCAGAACAATCCAAGCGAGCGCTGGAGGACATTATTGAGGTATCGAATCGGATCAATACCCTTGTTCG
TTCCATCACTGCCGATACCGTGCGCCAGCAGGAAAACTCCAGTTCCGTTGCCCAAGTCATGCAGTCCATTGAGCTAACGG
CCCAAGAGACCTCCCAGGAATCCCAACGGGTGGCAGGATCTCTGCAAACCCTGGTGTCCATCTCCCGCGATTTATTAACC
TCTGTGGAACGCTTCCGCCTGGAACAAAGTCTGAAATAA

Domains

Predicted by InterproScan.

HAMP domain (HAMP)

(576-607)

HAMP domain (HAMP)

(490-535)

Methyl-accepting chemotaxis protein (MCP) signalling domain (MCPsignal)

(670-852)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilJ Synechocystis sp. PCC 6803

63.956

100

0.652

Multiple sequence alignment