Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   ABXS94_RS12695 Genome accession   NZ_AP031566
Coordinates   2640154..2642295 (-) Length   713 a.a.
NCBI ID   WP_353675778.1    Uniprot ID   -
Organism   Acinetobacter towneri strain PT23-B2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2635154..2647295
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXS94_RS12680 (PT23B2_24500) - 2637620..2638465 (-) 846 WP_180043452.1 hypothetical protein -
  ABXS94_RS12685 (PT23B2_24510) aroB 2638476..2639555 (-) 1080 WP_353675262.1 3-dehydroquinate synthase -
  ABXS94_RS12690 (PT23B2_24520) aroK 2639574..2640116 (-) 543 WP_004974468.1 shikimate kinase AroK -
  ABXS94_RS12695 (PT23B2_24530) pilQ 2640154..2642295 (-) 2142 WP_353675778.1 type IV pilus secretin PilQ family protein Machinery gene
  ABXS94_RS12700 (PT23B2_24540) pilP 2642356..2642880 (-) 525 WP_104852650.1 pilus assembly protein PilP Machinery gene
  ABXS94_RS12705 (PT23B2_24550) comO 2642877..2643647 (-) 771 WP_131260644.1 type 4a pilus biogenesis protein PilO Machinery gene
  ABXS94_RS12710 (PT23B2_24560) pilN 2643644..2644279 (-) 636 WP_004974461.1 PilN domain-containing protein Machinery gene
  ABXS94_RS12715 (PT23B2_24570) pilM 2644279..2645337 (-) 1059 WP_353675263.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 713 a.a.        Molecular weight: 76878.01 Da        Isoelectric Point: 5.3419

>NTDB_id=110013 ABXS94_RS12695 WP_353675778.1 2640154..2642295(-) (pilQ) [Acinetobacter towneri strain PT23-B2]
MNNLFRQFSMGAVAMAVMQVANAQVSITNIVPMQIPGQGTEIRVMFNGLPPQPAAYQLEQPSRLILDFDKAQQTLKQNSV
AVATKEASSVEVSSDAQRSRLTVNLADAGAFTTRVEGNTFILKINSTTATPMAAVTAQRSAQGVSNIGFQRGGEGEGQVV
IDLLGSNTPVDVQQQGSKIVVRTLGNKVPAHLARRLNVNDFATPVSTIDAHNDGSNGVITIQAAGSYEYMAYQAEDKLTI
SLKRPVDKNPFKPRAAQSYTGKKISLDFQDIEVRRVLQLLADFTGINMVAADTVQGNITLRLKDVPWDQALDIILKTKNL
DKRRNGNVIWIAPVSELIKAEEEEAKAIAQSVKLAPLQTEYIQLNYAKAADIEKLITEGKNASNSRTGSNTGSGADPLGD
SVGSLLSPRGTVSVDPRTNTLIINDTSAKIDQIRQMIDLLDVSVKQVMIEARIVRATTDFTKEMGVKWGILSQGITNNNH
LLVGGSDTTLWNLREPEKDSDTGGWKYEIERPQNLNVDLGVTSAGASRIAFGLISLSDFMLDLELSALQADGYGEVISTP
KILTADKQNAKVASGTQIPYQSSEGGGVNAVSTTEFIDATLSLDVTPSITPDGKVQMQLNITSDSPGAATPTGQLTINKN
AVNTNVLVDNGETVVLGGIFEQQTANSQTKVPFLGDIPYIGRLFRKDIKSDNKRELLIFVTPRIVNDSVSRNH

Nucleotide


Download         Length: 2142 bp        

>NTDB_id=110013 ABXS94_RS12695 WP_353675778.1 2640154..2642295(-) (pilQ) [Acinetobacter towneri strain PT23-B2]
ATGAACAATTTGTTCCGTCAGTTTTCAATGGGCGCAGTCGCAATGGCAGTGATGCAAGTTGCCAATGCCCAAGTCAGCAT
TACCAACATCGTACCCATGCAAATTCCGGGACAGGGCACCGAAATTCGTGTCATGTTTAATGGTTTGCCACCTCAACCTG
CTGCATATCAGCTGGAACAACCTTCCCGCCTGATTTTAGATTTTGACAAAGCGCAACAAACGCTGAAGCAAAACAGCGTT
GCAGTCGCGACCAAAGAAGCCAGCTCTGTAGAGGTAAGCTCAGATGCACAGCGTTCACGTTTAACTGTGAACTTGGCCGA
TGCGGGTGCATTTACCACGCGTGTTGAAGGCAACACCTTTATTTTAAAAATTAACTCAACTACGGCAACGCCTATGGCTG
CCGTGACTGCTCAACGTAGCGCACAAGGCGTATCCAATATTGGTTTCCAGCGTGGCGGTGAAGGTGAAGGTCAGGTGGTG
ATTGATCTACTGGGTAGCAATACTCCTGTAGATGTGCAGCAGCAAGGCAGCAAAATTGTGGTACGTACTTTAGGCAATAA
AGTACCTGCACATTTAGCACGTCGTTTAAATGTAAATGACTTTGCAACACCTGTATCGACCATTGATGCACACAATGATG
GCAGCAATGGCGTGATTACTATTCAAGCTGCAGGCAGCTATGAATATATGGCATATCAGGCAGAAGACAAGCTAACCATC
AGCTTAAAACGCCCTGTCGATAAAAACCCGTTTAAACCACGTGCAGCTCAAAGCTATACAGGCAAAAAGATTTCACTAGA
TTTCCAAGACATCGAAGTGCGTCGTGTATTGCAGTTATTGGCTGATTTCACAGGCATTAACATGGTGGCGGCAGACACCG
TGCAAGGCAACATTACCTTACGTTTAAAAGATGTACCTTGGGATCAGGCGTTAGACATTATCCTGAAAACCAAAAACTTA
GATAAGCGTCGTAATGGCAACGTAATCTGGATTGCGCCTGTTTCTGAATTGATTAAAGCTGAAGAAGAAGAAGCCAAAGC
GATTGCGCAAAGTGTCAAATTGGCACCACTTCAAACTGAATATATTCAATTGAATTATGCCAAAGCGGCAGACATTGAAA
AGTTGATTACTGAAGGCAAAAATGCTTCAAATTCACGTACTGGTTCAAATACAGGCTCAGGTGCAGACCCATTAGGCGAT
AGCGTTGGTAGCTTGCTAAGCCCACGCGGTACTGTGTCGGTAGATCCACGTACCAATACCTTAATCATTAACGATACTTC
AGCAAAAATTGATCAGATTCGTCAAATGATTGATTTGCTAGATGTGTCTGTGAAGCAAGTGATGATTGAAGCACGTATTG
TTCGTGCAACCACAGATTTCACCAAAGAAATGGGGGTGAAGTGGGGCATCTTGTCACAAGGGATTACCAATAATAACCAC
TTGTTGGTGGGTGGTAGCGATACGACTTTGTGGAACTTGCGTGAACCAGAAAAAGATAGTGATACGGGTGGTTGGAAGTA
CGAAATTGAACGTCCACAAAACTTGAATGTCGATTTAGGAGTGACCAGTGCAGGTGCTAGCCGCATTGCCTTTGGTTTAA
TCAGTTTGTCTGACTTTATGCTAGATTTGGAATTGTCTGCATTACAAGCCGATGGTTACGGTGAAGTGATTTCGACACCA
AAAATCCTGACTGCAGATAAGCAAAATGCCAAAGTAGCATCGGGTACGCAAATTCCGTATCAATCTTCTGAGGGTGGGGG
TGTCAATGCTGTATCGACCACCGAATTTATTGATGCGACTTTAAGTCTAGATGTGACCCCAAGTATCACACCTGATGGTA
AAGTTCAAATGCAATTAAATATCACCAGTGATTCACCTGGTGCAGCAACACCTACAGGTCAGCTCACCATTAACAAGAAT
GCCGTGAATACCAACGTTTTGGTAGATAATGGTGAAACTGTGGTCTTGGGTGGTATTTTTGAGCAACAAACGGCTAACTC
ACAAACCAAAGTTCCATTCTTGGGCGATATTCCTTATATCGGACGTTTATTCCGTAAAGATATCAAGTCGGACAACAAAC
GTGAGTTGCTGATTTTTGTTACACCACGAATTGTTAATGACAGTGTTTCAAGAAATCATTAA

Domains

Predicted by InterproScan.

AMIN domain (AMIN)

(40-120)

Bacterial type II and III secretion system protein (Secretin)

(547-705)

Bacterial type II/III secretion system short domain (Secretin_N)

(360-446)

Secretin and TonB N terminus short domain (STN)

(291-333)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

76.657

100

0.778
  pilQ Acinetobacter baumannii strain A118

76.519

100

0.777
  comQ Acinetobacter baylyi ADP1

73.007

100

0.732
  pilQ Pseudomonas aeruginosa PAK

40.313

98.457

0.397
  pilQ Legionella pneumophila strain ERS1305867

37.624

99.158

0.373
  pilQ Legionella pneumophila strain Lp02

37.624

99.158

0.373

Multiple sequence alignment