Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   ABXS94_RS12705 Genome accession   NZ_AP031566
Coordinates   2642877..2643647 (-) Length   256 a.a.
NCBI ID   WP_131260644.1    Uniprot ID   A0A7Y8PT23
Organism   Acinetobacter towneri strain PT23-B2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2637877..2648647
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXS94_RS12685 (PT23B2_24510) aroB 2638476..2639555 (-) 1080 WP_353675262.1 3-dehydroquinate synthase -
  ABXS94_RS12690 (PT23B2_24520) aroK 2639574..2640116 (-) 543 WP_004974468.1 shikimate kinase AroK -
  ABXS94_RS12695 (PT23B2_24530) pilQ 2640154..2642295 (-) 2142 WP_353675778.1 type IV pilus secretin PilQ family protein Machinery gene
  ABXS94_RS12700 (PT23B2_24540) pilP 2642356..2642880 (-) 525 WP_104852650.1 pilus assembly protein PilP Machinery gene
  ABXS94_RS12705 (PT23B2_24550) comO 2642877..2643647 (-) 771 WP_131260644.1 type 4a pilus biogenesis protein PilO Machinery gene
  ABXS94_RS12710 (PT23B2_24560) pilN 2643644..2644279 (-) 636 WP_004974461.1 PilN domain-containing protein Machinery gene
  ABXS94_RS12715 (PT23B2_24570) pilM 2644279..2645337 (-) 1059 WP_353675263.1 pilus assembly protein PilM Machinery gene
  ABXS94_RS12720 (PT23B2_24580) ponA 2645507..2648059 (+) 2553 WP_353675264.1 penicillin-binding protein PBP1a -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 28982.82 Da        Isoelectric Point: 5.4538

>NTDB_id=110015 ABXS94_RS12705 WP_131260644.1 2642877..2643647(-) (comO) [Acinetobacter towneri strain PT23-B2]
MSLDEFDEVNQDAAVAPKKKMTVEKFFQQFNTLDPNNYGAWPLSVKITCWIFIIFLILALGYFVVIKPKLDAIAAAHTQE
QNLLNEFREKDSKLRNLQQYQAQLQEMEANFNQQLEQLPKETEIPGLVEDINVTGVNSGLKFKNIRLENEIKQEFFIEQP
ISIEATGDYHAFGSFVSGTAALPRIVTMHDFEIVATENKDKKTDIPQVTYKAQAKTYRYVGSADAQTTMESSATDTAANS
EKSNKRVNNTAKRGKK

Nucleotide


Download         Length: 771 bp        

>NTDB_id=110015 ABXS94_RS12705 WP_131260644.1 2642877..2643647(-) (comO) [Acinetobacter towneri strain PT23-B2]
ATGAGTCTCGATGAATTTGATGAAGTAAATCAGGATGCTGCTGTTGCTCCGAAAAAGAAAATGACAGTTGAAAAGTTTTT
TCAACAGTTCAATACCCTAGATCCTAACAATTATGGTGCTTGGCCACTTTCGGTCAAAATTACCTGCTGGATTTTTATTA
TTTTCCTGATTCTAGCTTTAGGTTACTTTGTCGTAATCAAGCCAAAGTTAGATGCCATTGCAGCAGCACATACACAAGAA
CAAAACTTGTTAAATGAGTTCCGTGAAAAAGATTCTAAATTGCGTAATTTGCAGCAATACCAAGCGCAATTACAAGAAAT
GGAAGCGAACTTTAACCAACAACTTGAACAATTGCCAAAAGAAACTGAAATTCCAGGTTTAGTTGAAGATATTAACGTCA
CAGGCGTGAATTCAGGTTTGAAGTTTAAAAACATTCGTTTAGAGAATGAAATTAAACAAGAGTTCTTTATTGAACAGCCA
ATTTCAATTGAAGCGACAGGCGATTATCATGCCTTTGGTTCATTCGTAAGCGGTACAGCAGCATTGCCACGTATTGTGAC
CATGCACGACTTTGAAATTGTGGCGACTGAAAATAAAGACAAGAAAACCGATATTCCGCAAGTGACCTATAAAGCACAAG
CAAAAACTTATCGTTATGTCGGCAGTGCAGATGCGCAAACTACAATGGAAAGCAGTGCAACCGATACTGCTGCGAATAGC
GAGAAGAGTAATAAAAGAGTAAATAATACTGCGAAAAGGGGTAAAAAATGA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(74-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Y8PT23

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Acinetobacter baylyi ADP1

70.539

94.141

0.664
  pilO Acinetobacter baumannii D1279779

70.124

94.141

0.66

Multiple sequence alignment