Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   ACMS1Y_RS08465 Genome accession   NZ_CP181431
Coordinates   1691422..1692672 (+) Length   416 a.a.
NCBI ID   WP_024424112.1    Uniprot ID   -
Organism   Bacillus safensis strain BS22LVI     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1686422..1697672
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMS1Y_RS08440 ymfI 1687843..1688571 (+) 729 WP_024424115.1 elongation factor P 5-aminopentanone reductase -
  ACMS1Y_RS08445 - 1688646..1688903 (+) 258 WP_024424114.1 DUF3243 domain-containing protein -
  ACMS1Y_RS08450 - 1689035..1689826 (+) 792 WP_003211480.1 DUF3388 domain-containing protein -
  ACMS1Y_RS08455 - 1689850..1690749 (+) 900 WP_025092608.1 helix-turn-helix domain-containing protein -
  ACMS1Y_RS08460 pgsA 1690824..1691405 (+) 582 WP_008358030.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACMS1Y_RS08465 cinA 1691422..1692672 (+) 1251 WP_024424112.1 competence/damage-inducible protein A Machinery gene
  ACMS1Y_RS08470 recA 1692850..1693893 (+) 1044 WP_024424111.1 recombinase RecA Machinery gene
  ACMS1Y_RS08475 - 1694038..1695213 (+) 1176 WP_415316238.1 serine hydrolase domain-containing protein -
  ACMS1Y_RS08480 rny 1695447..1697009 (+) 1563 WP_003211958.1 ribonuclease Y -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45551.64 Da        Isoelectric Point: 4.7414

>NTDB_id=1100096 ACMS1Y_RS08465 WP_024424112.1 1691422..1692672(+) (cinA) [Bacillus safensis strain BS22LVI]
MKSERKAEIIAVGSELLLGQITNTNAQFISKQLAEIGVNVYYHTAVGDNPERLKQAIQVAQERSNFIIFSGGLGPTKDDL
TKETIASTLGKELVLNEEAFESIQDYFLKTGRVMSPNNRKQALVLEGSDVLVNRFGMAPGMFVQEDDTFYMLLPGPPSEL
HPMFENEAKPLISEKLGLKEKIVSVVLRFFGIGESQLETDLEDLIDAQTNPTIAPLASDGEVTLRLTAKHEDEKETERLL
KETEAQILARVGEYFYGYGDTSLVREASKALHEHGKTVAAAESLTGGMFSEWLTDLEGASSILNGSVVCYTNQVKQQVLG
CREETLSSHGAVSKECALELAEGVRKLTGSDIGISFTGVAGPDTQEGQPVGKVFIGLSTKDQTDVFEWMFTGSRSGIRKR
AVKYGLHHLLNLLKES

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=1100096 ACMS1Y_RS08465 WP_024424112.1 1691422..1692672(+) (cinA) [Bacillus safensis strain BS22LVI]
TTGAAGTCAGAGAGAAAAGCAGAAATTATTGCAGTCGGTTCCGAACTATTGCTAGGGCAAATTACGAATACGAATGCACA
ATTCATCAGCAAACAACTAGCTGAAATTGGTGTGAATGTTTATTACCACACAGCAGTTGGTGACAATCCAGAGCGTTTAA
AACAGGCCATTCAGGTGGCGCAGGAAAGATCTAATTTTATTATCTTCTCAGGTGGTCTTGGACCAACCAAAGATGACTTA
ACAAAAGAAACCATTGCGAGCACGCTTGGCAAAGAGCTTGTACTAAATGAAGAAGCATTTGAATCGATTCAAGACTACTT
TCTAAAGACCGGACGCGTTATGTCACCGAACAACCGTAAGCAGGCACTCGTTCTAGAAGGGTCTGATGTGCTCGTGAACC
GTTTCGGGATGGCCCCGGGTATGTTTGTTCAAGAAGACGATACGTTTTATATGCTTCTTCCTGGACCGCCAAGTGAACTG
CACCCGATGTTTGAAAACGAGGCAAAGCCGCTGATTTCTGAGAAACTTGGCTTAAAGGAAAAGATCGTGTCTGTTGTTCT
GCGCTTCTTCGGAATCGGTGAATCGCAGCTTGAAACAGACCTAGAAGATTTAATTGATGCTCAAACCAACCCGACGATTG
CACCACTCGCATCTGACGGTGAAGTGACGTTAAGGCTGACTGCTAAGCATGAGGATGAAAAAGAAACAGAGCGTCTGTTA
AAAGAAACAGAAGCGCAAATTCTAGCGCGGGTAGGAGAGTACTTCTACGGTTATGGGGATACATCACTTGTCCGCGAAGC
GTCCAAAGCCTTGCACGAGCACGGGAAAACAGTAGCAGCAGCAGAAAGCCTGACTGGCGGAATGTTCTCTGAATGGCTGA
CAGATCTCGAAGGAGCATCATCCATTTTGAACGGAAGTGTGGTTTGTTATACAAACCAAGTCAAGCAGCAGGTACTTGGC
TGCCGGGAAGAAACATTGTCTTCTCATGGTGCTGTCAGCAAAGAGTGTGCTTTAGAGCTTGCTGAAGGGGTTAGAAAGCT
GACCGGAAGTGATATTGGCATTAGCTTTACGGGTGTAGCAGGACCTGATACCCAAGAGGGTCAGCCTGTTGGAAAAGTGT
TCATTGGACTATCTACGAAAGACCAGACGGACGTGTTTGAATGGATGTTTACAGGCAGCCGGTCAGGCATTCGAAAGCGT
GCTGTGAAATATGGTCTGCATCACTTACTCAACTTATTAAAAGAGAGTTAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(186-257)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)

Competence-damaged protein (CinA)

(262-412)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

75.422

99.76

0.752
  cinA Streptococcus pneumoniae TIGR4

47.981

100

0.486
  cinA Streptococcus mitis SK321

47.981

100

0.486
  cinA Streptococcus mitis NCTC 12261

47.743

100

0.483
  cinA Streptococcus pneumoniae Rx1

47.743

100

0.483
  cinA Streptococcus pneumoniae R6

47.743

100

0.483
  cinA Streptococcus mutans UA159

48.077

100

0.481
  cinA Streptococcus pneumoniae D39

47.506

100

0.481
  cinA Streptococcus suis isolate S10

43.386

90.865

0.394

Multiple sequence alignment