Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACNFWM_RS20615 Genome accession   NZ_CP181388
Coordinates   4371000..4372232 (-) Length   410 a.a.
NCBI ID   WP_416461614.1    Uniprot ID   -
Organism   Rubrivivax gelatinosus isolate YF10     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4366000..4377232
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNFWM_RS20580 - 4366039..4366425 (-) 387 WP_132648673.1 HesB/IscA family protein -
  ACNFWM_RS20585 - 4366428..4366622 (-) 195 WP_132648672.1 4Fe-4S binding protein -
  ACNFWM_RS20590 nifB 4366647..4368227 (-) 1581 WP_132648671.1 nitrogenase cofactor biosynthesis protein NifB -
  ACNFWM_RS20595 - 4368439..4368639 (-) 201 WP_132648670.1 DNA gyrase inhibitor YacG -
  ACNFWM_RS20600 zapD 4368662..4369417 (-) 756 WP_132648669.1 cell division protein ZapD -
  ACNFWM_RS20605 coaE 4369445..4370071 (-) 627 WP_132648668.1 dephospho-CoA kinase -
  ACNFWM_RS20610 - 4370053..4371003 (-) 951 WP_132648667.1 prepilin peptidase -
  ACNFWM_RS20615 pilC 4371000..4372232 (-) 1233 WP_416461614.1 type II secretion system F family protein Machinery gene
  ACNFWM_RS20620 pilB 4372256..4373977 (-) 1722 WP_132648665.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACNFWM_RS20625 chrA 4374084..4375301 (-) 1218 WP_132648664.1 chromate efflux transporter -
  ACNFWM_RS20630 - 4375301..4376311 (-) 1011 WP_132648663.1 sulfotransferase family protein -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 44832.87 Da        Isoelectric Point: 10.0005

>NTDB_id=1099964 ACNFWM_RS20615 WP_416461614.1 4371000..4372232(-) (pilC) [Rubrivivax gelatinosus isolate YF10]
MVTAASAARAKSAAKEQIFEWEGKDKNGKLVRGEIRAGGEAVVNASLRRQGILVTKVKKRRTSGGRSIKQKDIAIFTRQL
ATMMKAGVPLLQAFDIVARGAANPRMTKLLTDIRSDVETGTSLSAAFRKQPQYFDSLYCNLIEAGEAGGILEALLERLAI
YQEKTMALKQKIKSALMYPIAVMVVAFVVLTVIMIWVIPAFKEVFRSFGADLPAPTLFVIAMSEFFVAWWWAIFGLIFGG
TYFFFQSWKRSEKMQMVMDRLLLRLPVFGALIEKSVIARWTRTLATMFAAGVPLVEALDSVGGASGNAVYARATEQIQKD
VSTGSALTTSMTATSVFPTMVLQMSAIGEESGSLDHMLGKAAEFYEEEVDDMVKGLSSLMEPFIIVILGVLIGGIVVSMY
LPIFKLGAVV

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=1099964 ACNFWM_RS20615 WP_416461614.1 4371000..4372232(-) (pilC) [Rubrivivax gelatinosus isolate YF10]
ATGGTCACAGCAGCATCCGCAGCGCGCGCCAAGAGCGCCGCCAAGGAACAGATCTTCGAGTGGGAGGGCAAGGACAAGAA
CGGCAAGCTCGTGCGCGGCGAGATCCGCGCCGGGGGCGAGGCCGTCGTCAACGCCAGCCTGCGCCGCCAGGGCATCCTGG
TCACCAAGGTCAAGAAGCGCCGCACCTCGGGCGGCCGTTCGATCAAGCAGAAGGACATCGCGATCTTCACGCGCCAGCTG
GCGACGATGATGAAGGCCGGCGTGCCGCTCTTGCAGGCCTTCGACATCGTCGCGCGCGGGGCGGCCAACCCGCGCATGAC
CAAGCTGCTGACGGACATCCGCTCGGACGTCGAGACCGGCACCAGCCTGTCGGCCGCGTTCCGCAAGCAGCCGCAGTACT
TCGACTCGCTGTACTGCAACCTGATCGAGGCCGGCGAGGCCGGCGGCATCCTGGAGGCGCTGCTCGAGCGCCTGGCGATC
TACCAGGAGAAGACGATGGCGCTGAAGCAGAAGATCAAGTCGGCGCTGATGTACCCGATCGCCGTGATGGTCGTCGCCTT
CGTCGTGCTGACGGTCATCATGATCTGGGTGATCCCGGCGTTCAAGGAGGTCTTCCGCTCCTTCGGCGCCGACCTGCCGG
CACCGACGCTGTTCGTCATCGCGATGTCCGAGTTCTTCGTCGCGTGGTGGTGGGCGATCTTCGGCCTGATCTTCGGCGGC
ACCTACTTCTTCTTCCAGTCCTGGAAACGCTCCGAGAAGATGCAGATGGTCATGGACCGGCTGCTGCTGCGCCTGCCGGT
GTTCGGCGCGCTGATCGAGAAGTCGGTCATCGCACGCTGGACACGCACGCTGGCGACGATGTTCGCCGCCGGCGTGCCGC
TGGTCGAGGCACTCGACTCCGTCGGCGGCGCCTCGGGCAACGCGGTCTACGCCCGGGCCACCGAGCAGATCCAGAAGGAC
GTCTCCACCGGCTCGGCGCTGACCACCTCGATGACCGCGACCTCGGTATTCCCGACGATGGTGCTGCAGATGTCGGCCAT
CGGCGAGGAGTCCGGCTCGCTGGACCACATGCTGGGCAAGGCGGCCGAGTTCTACGAGGAAGAGGTCGACGACATGGTCA
AGGGCCTGTCCAGCCTGATGGAGCCCTTCATCATCGTCATCCTGGGCGTGCTGATCGGTGGCATTGTGGTCTCGATGTAC
CTGCCGATCTTCAAGCTGGGCGCCGTCGTTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(76-199)

Type II secretion system (T2SS), protein F (T2SSF)

(280-402)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.208

98.537

0.534
  pilG Neisseria gonorrhoeae MS11

53.634

97.317

0.522
  pilG Neisseria meningitidis 44/76-A

53.383

97.317

0.52
  pilC Legionella pneumophila strain ERS1305867

51.263

96.585

0.495
  pilC Acinetobacter baylyi ADP1

50

99.024

0.495
  pilC Acinetobacter baumannii D1279779

48.889

98.78

0.483
  pilC Vibrio campbellii strain DS40M4

41.5

97.561

0.405
  pilC Vibrio cholerae strain A1552

41.162

96.585

0.398
  pilC Thermus thermophilus HB27

38.847

97.317

0.378

Multiple sequence alignment