Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACNFWN_RS06925 Genome accession   NZ_CP181387
Coordinates   1452726..1453958 (-) Length   410 a.a.
NCBI ID   WP_416461614.1    Uniprot ID   -
Organism   Rubrivivax gelatinosus isolate AJ1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1447726..1458958
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNFWN_RS06890 - 1447765..1448151 (-) 387 WP_132648673.1 HesB/IscA family protein -
  ACNFWN_RS06895 - 1448154..1448348 (-) 195 WP_132648672.1 4Fe-4S binding protein -
  ACNFWN_RS06900 nifB 1448373..1449953 (-) 1581 WP_132648671.1 nitrogenase cofactor biosynthesis protein NifB -
  ACNFWN_RS06905 - 1450165..1450365 (-) 201 WP_132648670.1 DNA gyrase inhibitor YacG -
  ACNFWN_RS06910 zapD 1450388..1451143 (-) 756 WP_132648669.1 cell division protein ZapD -
  ACNFWN_RS06915 coaE 1451171..1451797 (-) 627 WP_132648668.1 dephospho-CoA kinase -
  ACNFWN_RS06920 - 1451779..1452729 (-) 951 WP_132648667.1 prepilin peptidase -
  ACNFWN_RS06925 pilC 1452726..1453958 (-) 1233 WP_416461614.1 type II secretion system F family protein Machinery gene
  ACNFWN_RS06930 pilB 1453982..1455703 (-) 1722 WP_132648665.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACNFWN_RS06935 chrA 1455810..1457027 (-) 1218 WP_132648664.1 chromate efflux transporter -
  ACNFWN_RS06940 - 1457027..1458037 (-) 1011 WP_132648663.1 sulfotransferase family protein -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 44832.87 Da        Isoelectric Point: 10.0005

>NTDB_id=1099937 ACNFWN_RS06925 WP_416461614.1 1452726..1453958(-) (pilC) [Rubrivivax gelatinosus isolate AJ1]
MVTAASAARAKSAAKEQIFEWEGKDKNGKLVRGEIRAGGEAVVNASLRRQGILVTKVKKRRTSGGRSIKQKDIAIFTRQL
ATMMKAGVPLLQAFDIVARGAANPRMTKLLTDIRSDVETGTSLSAAFRKQPQYFDSLYCNLIEAGEAGGILEALLERLAI
YQEKTMALKQKIKSALMYPIAVMVVAFVVLTVIMIWVIPAFKEVFRSFGADLPAPTLFVIAMSEFFVAWWWAIFGLIFGG
TYFFFQSWKRSEKMQMVMDRLLLRLPVFGALIEKSVIARWTRTLATMFAAGVPLVEALDSVGGASGNAVYARATEQIQKD
VSTGSALTTSMTATSVFPTMVLQMSAIGEESGSLDHMLGKAAEFYEEEVDDMVKGLSSLMEPFIIVILGVLIGGIVVSMY
LPIFKLGAVV

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=1099937 ACNFWN_RS06925 WP_416461614.1 1452726..1453958(-) (pilC) [Rubrivivax gelatinosus isolate AJ1]
ATGGTCACAGCAGCATCCGCAGCGCGCGCCAAGAGCGCCGCCAAGGAACAGATCTTCGAGTGGGAGGGCAAGGACAAGAA
CGGCAAGCTCGTGCGCGGCGAGATCCGCGCCGGGGGCGAGGCCGTCGTCAACGCCAGCCTGCGCCGCCAGGGCATCCTGG
TCACCAAGGTCAAGAAGCGCCGCACCTCGGGCGGCCGTTCGATCAAGCAGAAGGACATCGCGATCTTCACGCGCCAGCTG
GCGACGATGATGAAGGCCGGCGTGCCGCTCTTGCAGGCCTTCGACATCGTCGCGCGCGGGGCGGCCAACCCGCGCATGAC
CAAGCTGCTGACGGACATCCGCTCGGACGTCGAGACCGGCACCAGCCTGTCGGCCGCGTTCCGCAAGCAGCCGCAGTACT
TCGACTCGCTGTACTGCAACCTGATCGAGGCCGGCGAGGCCGGCGGCATCCTGGAGGCGCTGCTCGAGCGCCTGGCGATC
TACCAGGAGAAGACGATGGCGCTGAAGCAGAAGATCAAGTCGGCGCTGATGTACCCGATCGCCGTGATGGTCGTCGCCTT
CGTCGTGCTGACGGTCATCATGATCTGGGTGATCCCGGCGTTCAAGGAGGTCTTCCGCTCCTTCGGCGCCGACCTGCCGG
CACCGACGCTGTTCGTCATCGCGATGTCCGAGTTCTTCGTCGCGTGGTGGTGGGCGATCTTCGGCCTGATCTTCGGCGGC
ACCTACTTCTTCTTCCAGTCCTGGAAACGCTCCGAGAAGATGCAGATGGTCATGGACCGGCTGCTGCTGCGCCTGCCGGT
GTTCGGCGCGCTGATCGAGAAGTCGGTCATCGCACGCTGGACACGCACGCTGGCGACGATGTTCGCCGCCGGCGTGCCGC
TGGTCGAGGCACTCGACTCCGTCGGCGGCGCCTCGGGCAACGCGGTCTACGCCCGGGCCACCGAGCAGATCCAGAAGGAC
GTCTCCACCGGCTCGGCGCTGACCACCTCGATGACCGCGACCTCGGTATTCCCGACGATGGTGCTGCAGATGTCGGCCAT
CGGCGAGGAGTCCGGCTCGCTGGACCACATGCTGGGCAAGGCGGCCGAGTTCTACGAGGAAGAGGTCGACGACATGGTCA
AGGGCCTGTCCAGCCTGATGGAGCCCTTCATCATCGTCATCCTGGGCGTGCTGATCGGTGGCATTGTGGTCTCGATGTAC
CTGCCGATCTTCAAGCTGGGCGCCGTCGTTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(76-199)

Type II secretion system (T2SS), protein F (T2SSF)

(280-402)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.208

98.537

0.534
  pilG Neisseria gonorrhoeae MS11

53.634

97.317

0.522
  pilG Neisseria meningitidis 44/76-A

53.383

97.317

0.52
  pilC Legionella pneumophila strain ERS1305867

51.263

96.585

0.495
  pilC Acinetobacter baylyi ADP1

50

99.024

0.495
  pilC Acinetobacter baumannii D1279779

48.889

98.78

0.483
  pilC Vibrio campbellii strain DS40M4

41.5

97.561

0.405
  pilC Vibrio cholerae strain A1552

41.162

96.585

0.398
  pilC Thermus thermophilus HB27

38.847

97.317

0.378

Multiple sequence alignment