Detailed information NTG1099828

Bioinformatically predicted

Overview

• Name: cinA
• Type: Machinery gene
• Locus tag: ACNAN0_RS03500
• Genome accession: NZ_CP181347
• Coordinates: 724886..726127 (+)
• Length: 413 a.a.
• NCBI ID: WP_230914422.1
• Uniprot ID: -
• Organism: Agrilactobacillus fermenti strain POM1
• Function: facilitate localization of RecA (predicted from homology) Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IS/Tn	724404..724694	724886..726127	flank	192

Gene organization within MGE regions

Location: 724404..726127

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACNAN0_RS03500 (ACNAN0_03500)	cinA	724886..726127 (+)	1242	WP_230914422.1	competence/damage-inducible protein A	Machinery gene

Sequence

Protein

• Length: 413 a.a.
• Molecular weight: 45405.88 Da
• Isoelectric Point: 5.2966

>NTDB_id=1099828 ACNAN0_RS03500 WP_230914422.1 724886..726127(+) (cinA) [Agrilactobacillus fermenti strain POM1]
MQAEIIAVGTELLLGQINDTNGQFLARTLADIGIDTYFQTVVGDNPARLKSVLKLAFSRSDLIITIGGLGPTEDDLTKQT
VAEFIDRPLVPDQTAMTNLLRFYEQSHRELTENNKIQAYYPEGAQVLPNDDGLAVGSVTTIDDKTIIMLPGPPSEFQPMV
LNHLREILIKLSHKDHVLVSRVLRFFGIGESQIATKLADLIDTQSNPTLATYAKDYETTLRLTAKAKNSGDAKRYLDELE
AKVQQRIGAYFYGYGDNNNLQQVVVKELIRRDLSITAAESLTGGLFQSMIAEVPASSQVFAGGFVTYALEEKAKMLGIDA
AILHEHGVVSEMTAKLMAEKSRQQVGSQIGVGFTGVAGPDELEGQKVGTVYIGLSFADQPTQVKLFHFPRQRNDIRVSAA
MAGFFMIYQQLKK

Nucleotide

• Length: 1242 bp

>NTDB_id=1099828 ACNAN0_RS03500 WP_230914422.1 724886..726127(+) (cinA) [Agrilactobacillus fermenti strain POM1]
TTGCAAGCAGAGATCATAGCAGTTGGGACAGAATTATTACTGGGTCAGATCAACGATACGAATGGTCAATTTTTAGCACG
GACACTAGCAGATATTGGTATTGATACTTATTTTCAAACGGTGGTTGGGGATAATCCGGCACGCTTAAAATCGGTTTTAA
AACTAGCTTTTAGTCGAAGTGATTTGATTATTACGATCGGTGGGTTGGGCCCAACTGAAGATGATTTGACAAAACAAACG
GTTGCTGAATTTATCGACCGGCCACTAGTGCCAGATCAAACGGCCATGACCAATTTACTGCGGTTTTATGAGCAAAGTCA
TCGGGAATTAACAGAGAATAATAAGATTCAAGCATATTATCCGGAAGGTGCTCAGGTTTTGCCTAACGATGATGGTTTAG
CCGTTGGTTCTGTCACCACCATTGACGATAAAACGATTATCATGCTTCCAGGACCACCAAGTGAATTTCAGCCAATGGTT
CTTAACCATTTGCGGGAAATCTTAATTAAGCTTTCACATAAAGACCACGTTCTGGTTTCTCGGGTGTTACGCTTTTTCGG
TATTGGTGAGTCTCAGATTGCTACTAAATTAGCTGATTTAATTGACACACAAAGCAATCCGACTTTAGCGACCTATGCGA
AAGATTATGAAACAACTTTGCGTTTAACTGCCAAGGCGAAAAATAGTGGTGATGCCAAACGGTATTTAGATGAGTTGGAA
GCTAAGGTGCAGCAACGAATTGGCGCTTATTTTTATGGCTATGGTGATAATAACAATTTACAACAAGTTGTGGTAAAAGA
GTTAATTCGTCGAGACCTATCTATTACAGCCGCCGAAAGCTTAACTGGTGGGCTTTTCCAAAGTATGATTGCGGAAGTGC
CGGCTTCATCACAAGTGTTTGCTGGTGGATTTGTGACCTATGCTCTAGAAGAAAAAGCCAAAATGCTAGGTATTGATGCG
GCGATCTTGCATGAACATGGGGTTGTTAGTGAAATGACAGCTAAATTAATGGCAGAAAAAAGTCGACAGCAGGTTGGCAG
TCAAATTGGCGTAGGTTTCACAGGTGTTGCTGGTCCTGATGAGTTAGAAGGCCAAAAAGTTGGGACTGTTTATATTGGCT
TGTCATTTGCTGATCAACCAACTCAAGTTAAGTTATTTCATTTTCCGCGTCAGCGAAACGATATTCGAGTCTCGGCGGCT
ATGGCAGGCTTTTTCATGATCTATCAGCAATTAAAAAAATAA

Domains

Predicted by InterproScan.

• Competence-damaged protein (CinA) (258-410)

• Damage-inducible protein CinA KH domain (CinA_KH) (180-253)

• Probable molybdopterin binding domain (MoCF_biosynth) (5-166)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cinA	Streptococcus pneumoniae TIGR4	52.619	100	0.535
cinA	Streptococcus pneumoniae Rx1	52.381	100	0.533
cinA	Streptococcus pneumoniae R6	52.381	100	0.533
cinA	Streptococcus pneumoniae D39	52.143	100	0.53
cinA	Streptococcus mitis SK321	51.79	100	0.525
cinA	Streptococcus mitis NCTC 12261	51.79	100	0.525
cinA	Streptococcus mutans UA159	51.932	100	0.521
cinA	Bacillus subtilis subsp. subtilis str. 168	44.417	99.758	0.443
cinA	Streptococcus suis isolate S10	44.18	91.525	0.404